Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53160 295 / 7e-103 RCAR3, PYL8 PYR1-like 8, regulatory components of ABA receptor 3 (.1.2) AT1G01360 280 / 3e-97 PYL9, RCAR1 PYRABACTIN RESISTANCE 1-LIKE 9, regulatory component of ABA receptor 1 (.1) AT4G01026 269 / 3e-92 RCAR2, PYL7 regulatory components of ABA receptor 2, PYR1-like 7 (.1) AT4G27920 261 / 9e-90 RCAR4, PYL10 regulatory components of ABA receptor 4, PYR1-like 10 (.1) AT5G05440 166 / 4e-52 RCAR8, PYL5 regulatory component of ABA receptor 8, PYRABACTIN RESISTANCE 1-LIKE 5, Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT2G38310 164 / 6e-51 RCAR10, PYL4 regulatory components of ABA receptor 10, PYR1-like 4 (.1) AT2G40330 160 / 2e-49 RCAR9, PYL6 regulatory components of ABA receptor 9, PYR1-like 6 (.1) AT2G26040 155 / 1e-47 RCAR14, PYL2 regulatory components of ABA receptor 14, PYR1-like 2 (.1) AT4G17870 147 / 9e-45 RCAR11, PYR1 regulatory component of ABA receptor 11, PYRABACTIN RESISTANCE 1, Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G73000 138 / 7e-41 RCAR13, PYL3 regulatory components of ABA receptor 13, PYR1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001059 [exp] 390 / 2e-140 AT5G53160 306 / 1e-107 PYR1-like 8, regulatory components of ABA receptor 3 (.1.2) Lus10038818 [exp] 309 / 6e-108 AT5G53160 287 / 1e-99 PYR1-like 8, regulatory components of ABA receptor 3 (.1.2) Lus10014929 [exp] 304 / 5e-106 AT5G53160 289 / 2e-100 PYR1-like 8, regulatory components of ABA receptor 3 (.1.2) Lus10040916 [exp] 257 / 6e-88 AT1G01360 265 / 1e-91 PYRABACTIN RESISTANCE 1-LIKE 9, regulatory component of ABA receptor 1 (.1) Lus10014239 [exp] 177 / 6e-56 AT2G38310 250 / 5e-85 regulatory components of ABA receptor 10, PYR1-like 4 (.1) Lus10022675 [exp] 176 / 7e-55 AT2G38310 249 / 1e-83 regulatory components of ABA receptor 10, PYR1-like 4 (.1) Lus10012231 [exp] 167 / 5e-52 AT2G38310 234 / 1e-78 regulatory components of ABA receptor 10, PYR1-like 4 (.1) Lus10007530 [exp] 160 / 2e-50 AT2G38310 198 / 1e-65 regulatory components of ABA receptor 10, PYR1-like 4 (.1) Lus10024991 [exp] 144 / 5e-43 AT2G26040 264 / 7e-91 regulatory components of ABA receptor 14, PYR1-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G020500 [exp] 314 / 1e-110 AT5G53160 304 / 7e-107 PYR1-like 8, regulatory components of ABA receptor 3 (.1.2) Potri.012G000800 [exp] 314 / 1e-110 AT5G53160 303 / 1e-106 PYR1-like 8, regulatory components of ABA receptor 3 (.1.2) Potri.003G139200 [exp] 312 / 8e-110 AT5G53160 297 / 3e-104 PYR1-like 8, regulatory components of ABA receptor 3 (.1.2) Potri.001G092500 [exp] 311 / 3e-109 AT5G53160 296 / 7e-104 PYR1-like 8, regulatory components of ABA receptor 3 (.1.2) Potri.002G169400 [exp] 301 / 1e-105 AT1G01360 305 / 2e-107 PYRABACTIN RESISTANCE 1-LIKE 9, regulatory component of ABA receptor 1 (.1) Potri.014G097100 [exp] 300 / 3e-105 AT1G01360 301 / 6e-106 PYRABACTIN RESISTANCE 1-LIKE 9, regulatory component of ABA receptor 1 (.1) Potri.016G125400 [exp] 179 / 1e-56 AT2G38310 256 / 3e-87 regulatory components of ABA receptor 10, PYR1-like 4 (.1) Potri.006G104100 [exp] 177 / 6e-56 AT2G38310 249 / 2e-84 regulatory components of ABA receptor 10, PYR1-like 4 (.1) Potri.018G054400 [exp] 163 / 5e-51 AT2G26040 273 / 1e-94 regulatory components of ABA receptor 14, PYR1-like 2 (.1) Potri.010G183900 [exp] 161 / 6e-50 AT2G40330 243 / 8e-82 regulatory components of ABA receptor 9, PYR1-like 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF10604 [flax] [poplar] Polyketide_cyc2 Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Lus10039335 pacid=23175524 polypeptide=Lus10039335 locus=Lus10039335.g ID=Lus10039335.BGIv1.0 annot-version=v1.0 ATGAATTTCGATAGTAGCAATGGAGCGGCGACCACGACTGCCAAGGGGCTAGGGAGCATGGAGACTGAGTCCATCAGGAGACACCATAGGCATGATCCTG GCGAGAATCAGTGCAGCTCCGTTCTCATTAAGCACATCAAAGCTCCGGTTCATCTGGTAAGAGATGTTAGGTTTCGAATTTCCGAGCTCCGTTTGGTTTG GTCCTTGGTTAGGAGATTCGATCAACCGCAGAAGTATAAGCCATTCATCAGCAGATGTGTTGCTCGTGGAAATCTCGAGATAGGTAGTCTTAGAGAGATT GATGTCAAATCAGGGCTTCCAGCTACTACAAGTACTGAAAGATTAGAGCTTCTTGATGATGAGGAGCATATCCTCAGTATGCGCATTGTTGGCGGAGATC ACAGACTAAAGAACTATTCTTCAATAGTTCCCCTACACCCGGAGATTCTCGATGGCAGACCGGGGACATTAGTGATCGAATCGTTCGTGGTGGATGTGCC AGACGGGAACACCAAGGACGAGACCTGCTACTTTGTTGAAGCGCTCATCAAATGCAACCTCAAGTCTCTGGCTGATGTATCTGAGCGGCTTGCAGTACAG GACAGGACCGAACCCATCGATCGTAACTGA
AA sequence Show only first row Show all	>Lus10039335 pacid=23175524 polypeptide=Lus10039335 locus=Lus10039335.g ID=Lus10039335.BGIv1.0 annot-version=v1.0 MNFDSSNGAATTTAKGLGSMETESIRRHHRHDPGENQCSSVLIKHIKAPVHLVRDVRFRISELRLVWSLVRRFDQPQKYKPFISRCVARGNLEIGSLREI DVKSGLPATTSTERLELLDDEEHILSMRIVGGDHRLKNYSSIVPLHPEILDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSERLAVQ DRTEPIDRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10039335 [exp]	0	1
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006461 [exp]	1.0	0.9741
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	2.8	0.9704
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10018383 [exp]	3.5	0.9691
AT1G72890			Disease resistance protein (TI...		Lus10019142 [exp]	3.6	0.9612
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10028311 [exp]	5.9	0.9661
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	6.3	0.9691
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10043026 [exp]	6.7	0.9694
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10041699 [exp]	7.3	0.9589
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10020828 [exp]	8.9	0.9646
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	10.4	0.9682

Compare expression of checked genes

Lus10039335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.