Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26390 105 / 2e-25 Serine protease inhibitor (SERPIN) family protein (.1) AT2G25240 97 / 1e-22 Serine protease inhibitor (SERPIN) family protein (.1) AT3G45220 92 / 1e-20 Serine protease inhibitor (SERPIN) family protein (.1) AT1G47710 82 / 3e-17 Serine protease inhibitor (SERPIN) family protein (.1) AT1G64010 67 / 6e-13 Serine protease inhibitor (SERPIN) family protein (.1) AT1G62170 66 / 5e-12 Serine protease inhibitor (SERPIN) family protein (.1), Serine protease inhibitor (SERPIN) family protein (.2) AT2G35580 66 / 6e-12 Serine protease inhibitor (SERPIN) family protein (.1) AT1G64030 58 / 3e-09 ATSRP3 serpin 3 (.1) AT1G62160 57 / 3e-09 Serine protease inhibitor (SERPIN) family protein (.1) AT2G14540 52 / 3e-07 ATSRP2 serpin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019009 [exp] 272 / 3e-89 AT1G47710 209 / 9e-64 Serine protease inhibitor (SERPIN) family protein (.1) Lus10039337 [exp] 128 / 4e-36 ND 42 / 6e-05 Lus10009906 [exp] 122 / 3e-34 AT1G47710 48 / 3e-07 Serine protease inhibitor (SERPIN) family protein (.1) Lus10032600 [exp] 125 / 4e-34 AT1G47710 99 / 6e-24 Serine protease inhibitor (SERPIN) family protein (.1) Lus10009949 [exp] 116 / 1e-32 ND 43 / 2e-06 Lus10040926 [exp] 109 / 3e-28 AT1G47710 115 / 2e-30 Serine protease inhibitor (SERPIN) family protein (.1) Lus10032754 [exp] 97 / 2e-22 AT1G47710 487 / 1e-172 Serine protease inhibitor (SERPIN) family protein (.1) Lus10002792 [exp] 93 / 6e-21 AT1G47710 495 / 6e-176 Serine protease inhibitor (SERPIN) family protein (.1) Lus10034364 [exp] 86 / 1e-18 AT1G47710 296 / 4e-97 Serine protease inhibitor (SERPIN) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100900 [exp] 96 / 5e-22 AT1G47710 337 / 2e-113 Serine protease inhibitor (SERPIN) family protein (.1) Potri.014G036000 [exp] 70 / 3e-13 AT1G47710 476 / 1e-168 Serine protease inhibitor (SERPIN) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00079 [flax] [poplar] Serpin Serpin (serine protease inhibitor)
Representative CDS sequence Show only first row Show all	>Lus10039336 pacid=23175458 polypeptide=Lus10039336 locus=Lus10039336.g ID=Lus10039336.BGIv1.0 annot-version=v1.0 ATGGACTTCTCAATCCGCGTAGCTATAGAGACAATTCTCCACAAACTCGGAGATGGTGTCGTCTTACCAGAAAATGTTGTGATGTCTCCCGCATCATTCG ACATCTTTCTCCGTATGGTGGCATGCGAAGCGGACAGGCCAACTCTAGACCAGTTGCTAAGTTTTCTTGGAGCCCAAGACATCGAAGATTTCAATTCCAA AGCTTCGACAACCATGCAAGCCTTGCATCAAGCCATACTGGTGGAAAACAACGAACCCTTCGCCCGTTTTCTGAATCTGCAGCCACCAATTGTAAACCAC GCCAATGCTGTTTTGGTGGACCGAAAATATTCCTTAATTGAATCATTCAAGAAGATGATTAGTGATATCTACCAGGCCGACACTAAGGCTGCTGATTTTC ATTTCCAGGTCCTCAAGCTCCCCTATGAACCGTTGAGTTCCCTAAGCGATAAAACATACCCTCAATTCTCCATGTTCATCTTCCTTCCCCGGGAACAGGA AGGGCTTCCTCACATGCTACGCAAGCACTTCGGCAGCTCGAATCCTGGTGAGGTATTTTCACAAACACTTGGTAAGCTTGAGAGACAATACATGGGAAAA GTGCCCATCCCCAAGTGGAAATTCTCCCTCCGGTGCGAGCCAAAGGAGTCGATGCAGAAGTTGGGGCTCACATTGCCTTTCGAGTCCGCTGGGGATTTCG TCAAGATGTTTTGCCAGCCCTGTAATAAGATACCGTCAATGGCTATTTCTAAGATAATTCAGAGTACTTCTATTCAGATGGATGGGATAGGTACGGTGGC TGCAGCTGCTTCCGTAGCCTCTTGGGGACAAATGTCAACTGGTTCACCAAAGTTTAAACAATCGGTGGATGATTTTATTCCAGACCATCCTTTCATATTC TTGATAATGGAGAAACAAAGTAAGATTGTCATCTTCGCTGGATCGATGGTCAATCCTCTTACATGA
AA sequence Show only first row Show all	>Lus10039336 pacid=23175458 polypeptide=Lus10039336 locus=Lus10039336.g ID=Lus10039336.BGIv1.0 annot-version=v1.0 MDFSIRVAIETILHKLGDGVVLPENVVMSPASFDIFLRMVACEADRPTLDQLLSFLGAQDIEDFNSKASTTMQALHQAILVENNEPFARFLNLQPPIVNH ANAVLVDRKYSLIESFKKMISDIYQADTKAADFHFQVLKLPYEPLSSLSDKTYPQFSMFIFLPREQEGLPHMLRKHFGSSNPGEVFSQTLGKLERQYMGK VPIPKWKFSLRCEPKESMQKLGLTLPFESAGDFVKMFCQPCNKIPSMAISKIIQSTSIQMDGIGTVAAAASVASWGQMSTGSPKFKQSVDDFIPDHPFIF LIMEKQSKIVIFAGSMVNPLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26390			Serine protease inhibitor (SER...		Lus10039336 [exp]	0	1
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	3.2	0.9905
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10000981 [exp]	4.1	0.9268
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	4.5	0.9905
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10028418 [exp]	5.1	0.9606
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	5.5	0.9905
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	6.3	0.9897
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036890 [exp]	6.6	0.7839
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	7.1	0.9889
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	7.7	0.9880
AT3G24060			Plant self-incompatibility pro...		Lus10017719 [exp]	8.4	0.9867

Compare expression of checked genes

Lus10039336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.