Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47710 43 / 5e-05 Serine protease inhibitor (SERPIN) family protein (.1) AT1G64020 39 / 0.0003 Serine protease inhibitor (SERPIN) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009906 [exp] 126 / 5e-38 AT1G47710 48 / 3e-07 Serine protease inhibitor (SERPIN) family protein (.1) Lus10039336 [exp] 128 / 3e-36 AT2G26390 105 / 2e-25 Serine protease inhibitor (SERPIN) family protein (.1) Lus10019009 [exp] 115 / 4e-31 AT1G47710 209 / 9e-64 Serine protease inhibitor (SERPIN) family protein (.1) Lus10032600 [exp] 112 / 1e-30 AT1G47710 99 / 6e-24 Serine protease inhibitor (SERPIN) family protein (.1) Lus10009949 [exp] 101 / 2e-28 ND 43 / 2e-06 Lus10002792 [exp] 50 / 2e-07 AT1G47710 495 / 6e-176 Serine protease inhibitor (SERPIN) family protein (.1) Lus10040926 [exp] 47 / 2e-06 AT1G47710 115 / 2e-30 Serine protease inhibitor (SERPIN) family protein (.1) Lus10032754 [exp] 47 / 3e-06 AT1G47710 487 / 1e-172 Serine protease inhibitor (SERPIN) family protein (.1) Lus10005087 [exp] 41 / 0.0002 AT2G26390 44 / 6e-10 Serine protease inhibitor (SERPIN) family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039337 pacid=23175653 polypeptide=Lus10039337 locus=Lus10039337.g ID=Lus10039337.BGIv1.0 annot-version=v1.0 ATGGACTTCTCAATCCGCGTGCCCATAGAGACAATTCTAGGCGAACTCGACACCATAAAGAGACGCAACGCCGACGATGGTGTTCCCGCTGTGAAAAACA CCGTCATGTCTCTGGCATCACGCGACATCTTGCTCTGTATGGTGGCTTGCAAAGCCCAAGGGCCAACCCTAGACCAGTTGCTAAGTTTCCTTGGAGAACA AGACATCGAAGATCTCAATTTCAAAGCTTCAGTGATCATGGAAGGCTTGCGTCAAGCTCTACCACTAGAAAACGACAGAGAAAGAGCCTTCTTAGCTCGA CAGGAAAGCGAGCCGCCAGTTATAAACCGTGCCAACGTTGGTTGGGTGGATAAGAAGTACTCATTGAGTGAATCATTAAAGAAGATGTCTATCAGGCCGA CACCAACACTGCCGATTTTGAATTCCAGGTCCCTAAGAAAGCAGCCAAGAAAATCAATGCATGGTCAAAATAATCAACCAAAGGATGCATCGATAACATC GTTAACTCTCGAGACATAA
AA sequence Show only first row Show all	>Lus10039337 pacid=23175653 polypeptide=Lus10039337 locus=Lus10039337.g ID=Lus10039337.BGIv1.0 annot-version=v1.0 MDFSIRVPIETILGELDTIKRRNADDGVPAVKNTVMSLASRDILLCMVACKAQGPTLDQLLSFLGEQDIEDLNFKASVIMEGLRQALPLENDRERAFLAR QESEPPVINRANVGWVDKKYSLSESLKKMSIRPTPTLPILNSRSLRKQPRKSMHGQNNQPKDASITSLTLET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039337 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	4.5	1.0000
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	6.5	1.0000
					Lus10003843 [exp]	8.9	1.0000
					Lus10022996 [exp]	9.2	1.0000
					Lus10001326 [exp]	9.3	1.0000
					Lus10004351 [exp]	10.5	1.0000
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Lus10038850 [exp]	13.2	1.0000
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10028908 [exp]	13.4	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	14.1	1.0000
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	14.1	1.0000

Compare expression of checked genes

Lus10039337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.