Gene [FLAX] | FIBexDB

Lus10039338 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10003766 [exp]	144 / 9e-46	ND	36 / 0.004
Lus10039973 [exp]	117 / 6e-36	ND	/
Lus10032975 [exp]	86 / 3e-23	ND	40 / 1e-04
Lus10037411 [exp]	92 / 4e-23	AT2G28450	874 / 0.0	zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Lus10006779 [exp]	79 / 2e-20	AT5G63920	42 / 2e-05	topoisomerase 3alpha (.1)
Lus10005485 [exp]	69 / 1e-16	ND	34 / 0.007
Lus10011688 [exp]	49 / 3e-08	ND	/
Lus10027102 [exp]	43 / 2e-06	ND	39 / 3e-04
Lus10009212 [exp]	38 / 0.0002	ND	37 / 0.001

Poplar homologues

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No hit found

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0167 [flax] [poplar]	Zn_Beta_Ribbon	PF06839 [flax] [poplar]	zf-GRF	GRF zinc finger

Representative CDS sequence

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>Lus10039338 pacid=23175592 polypeptide=Lus10039338 locus=Lus10039338.g ID=Lus10039338.BGIv1.0 annot-version=v1.0

ATGGGATCTACCAACAATGGTTCTAGTGGTCGGAAATCAGTGACCACCTCGATGGGATCAAGTTCAATTACGTGTTCCCACAACGTGGAGGCCGTTCTGA

AGATGGGGACTATTGCAAAGAATCATGGCCAAACCTTCTTCCGATGCCCGTTCTGGAGGACTTCTTATTGTGGGTTCTTCGCATGGGAGTCCGATTTTTC

CCGATTTGAACTAGAGGCTACAGTTCCTGACCAAGGCGTTGTAAGAAGGCTTGAAGAACCACTAATGAGCTTGCAATGA

AA sequence

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>Lus10039338 pacid=23175592 polypeptide=Lus10039338 locus=Lus10039338.g ID=Lus10039338.BGIv1.0 annot-version=v1.0

MGSTNNGSSGRKSVTTSMGSSSITCSHNVEAVLKMGTIAKNHGQTFFRCPFWRTSYCGFFAWESDFSRFELEATVPDQGVVRRLEEPLMSLQ

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039338 [exp]	0	1

Lus10039338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.