Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78090 310 / 6e-104 ATTPPB Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) AT1G35910 303 / 2e-101 TPPD trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G10100 301 / 9e-101 TPPI trehalose-6-phosphate phosphatase I, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT4G22590 298 / 2e-99 TPPG trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39770 297 / 3e-99 TPPH trehalose-6-phosphate phosphatase H, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G51460 297 / 6e-99 ATTPPA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT5G65140 295 / 2e-98 TPPJ trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT2G22190 290 / 2e-96 TPPE trehalose-6-phosphate phosphatase E, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G22210 283 / 5e-94 TPPC trehalose-6-phosphate phosphatase C, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G12430 279 / 7e-92 TPPF trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019010 [exp] 637 / 0 AT1G78090 338 / 6e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10027208 [exp] 316 / 3e-106 AT5G51460 515 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10038921 [exp] 313 / 3e-104 AT5G51460 488 / 2e-172 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10019666 [exp] 304 / 5e-102 AT5G65140 483 / 9e-173 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10031146 [exp] 300 / 5e-100 AT5G51460 517 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10024607 [exp] 299 / 2e-99 AT4G22590 534 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032244 [exp] 298 / 6e-99 AT4G22590 531 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10031723 [exp] 295 / 3e-98 AT5G51460 511 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10000687 [exp] 246 / 4e-79 AT5G65140 451 / 3e-159 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G001000 [exp] 443 / 1e-156 AT1G35910 336 / 4e-114 trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G020300 [exp] 421 / 4e-148 AT1G78090 333 / 4e-113 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Potri.012G126100 [exp] 317 / 1e-106 AT5G51460 526 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.015G126900 [exp] 308 / 4e-103 AT5G51460 531 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.007G090900 [exp] 305 / 4e-102 AT5G65140 548 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.005G077200 [exp] 305 / 5e-102 AT5G65140 545 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G120500 [exp] 304 / 1e-101 AT4G22590 501 / 2e-178 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G094500 [exp] 302 / 7e-101 AT5G65140 489 / 3e-174 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.003G112400 [exp] 296 / 1e-98 AT4G12430 485 / 3e-172 trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.005G166700 [exp] 221 / 3e-70 AT5G65140 362 / 8e-126 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Lus10039339 pacid=23175490 polypeptide=Lus10039339 locus=Lus10039339.g ID=Lus10039339.BGIv1.0 annot-version=v1.0 ATGGGACTTCAGCGATCTCCTTCTAACAACAAGCAGAAACTTGGACAGGTCAACAGCGACCCTCCTGTAAATAACACCAAGACAATGCCTGGTTCAGGGC TTGTTAGGGTTATTGAAGATGTTAACTATACTTCATGGGTGGGTGAGCACCCATCTGCATTGCACTCATTTGATCAGATGATGAAGGCAGCGAAAGGGAA GAAGATCATCGTCTTTTTGGACTACGATGGAACACTCTCCCCTATTGTAGATGATCCTAACTTGGCTTTCATGTCTGAAGAGATGCGTGCAGCTGTACGT GAGGTTGCTAAATGCTTTCCAACTGCTATAATCAGTGGTAGAAGTATAGACAAGGTGAAAGAATTTGTGCAGTTGAGCAATGTATATTATGCTGGGAGCC ATGGAATGGACATCATGGCACCCCCAAGGCCGGTTAAGTCTTGTGACGGCCATTCCCCAACTTTGGTAATGGACAAAAAGGGAACTGAAGTGCTCTTCCA ACCTGCAAAGAGATTTTTGCCCACAATTGAGAAGATATTGAAAGAGCTGGAGGAGGAAACAGAAAAAGTGAAAGGTGCCAGGGTGGAGGATAACCGCTTC TGCGTCTCTGTACATTTCCGGCAGGTCAATGATGAGGATTATCCATCTCTGGAGGAGAAAGTTAAGTCTGTGCTGGAAAAGTATGCAGACTTTCACTTGT GCTGGGGTAAAAAGGTTATGGAAATAAGGCCAACAATAGAGTGGGACAAAGGTCATGCTGTGGAATATTTCTTAGAAACATTAGGACTAAGTAACTCTGA CGTTATTCCAGTCTATATTGGAGATGACCGAACTGATGAGGATGCTTTCAAGGTAATACAACGAAGAGGAACAGGGTACCCGATTATAGTAACATCCTGC CCTAAGGAAACCAAGGCATCTCACTCCCTAGTTGATCCATCCGAAGTTTTGACATTTTTGTTGCGGTTAGCAAGGTGGAGGAAGTCGTCTAGCTCAAGTA GATCTCTTAACCAAATCTGGGGGGTAGTCAACTGA
AA sequence Show only first row Show all	>Lus10039339 pacid=23175490 polypeptide=Lus10039339 locus=Lus10039339.g ID=Lus10039339.BGIv1.0 annot-version=v1.0 MGLQRSPSNNKQKLGQVNSDPPVNNTKTMPGSGLVRVIEDVNYTSWVGEHPSALHSFDQMMKAAKGKKIIVFLDYDGTLSPIVDDPNLAFMSEEMRAAVR EVAKCFPTAIISGRSIDKVKEFVQLSNVYYAGSHGMDIMAPPRPVKSCDGHSPTLVMDKKGTEVLFQPAKRFLPTIEKILKELEEETEKVKGARVEDNRF CVSVHFRQVNDEDYPSLEEKVKSVLEKYADFHLCWGKKVMEIRPTIEWDKGHAVEYFLETLGLSNSDVIPVYIGDDRTDEDAFKVIQRRGTGYPIIVTSC PKETKASHSLVDPSEVLTFLLRLARWRKSSSSSRSLNQIWGVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78090		ATTPPB	Arabidopsis thaliana trehalose...		Lus10039339 [exp]	0	1
AT1G78090		ATTPPB	Arabidopsis thaliana trehalose...		Lus10019010 [exp]	3.0	0.7708
AT1G31500			DNAse I-like superfamily prote...		Lus10042463 [exp]	3.2	0.8100
AT3G49645			unknown protein		Lus10002833 [exp]	7.7	0.7858
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	9.1	0.7977
AT5G56790			Protein kinase superfamily pro...		Lus10024111 [exp]	22.9	0.7405
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10036909 [exp]	24.0	0.7910
AT3G07180			GPI transamidase component PIG...		Lus10022779 [exp]	46.4	0.7494
AT5G17620			unknown protein		Lus10013643 [exp]	47.9	0.7572
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010676 [exp]	54.0	0.7282
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	62.5	0.7565

Compare expression of checked genes

Lus10039339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.