Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61700 182 / 5e-55 Plant protein 1589 of unknown function (.1.2) AT2G46420 167 / 4e-49 Plant protein 1589 of unknown function (.1.2) AT3G10250 137 / 4e-38 Plant protein 1589 of unknown function (.1.2) AT5G04090 131 / 7e-36 Plant protein 1589 of unknown function (.1.2) AT3G55240 66 / 2e-13 Plant protein 1589 of unknown function (.1) AT2G29605 67 / 3e-12 Plant protein 1589 of unknown function (.1) AT5G02580 56 / 4e-10 Plant protein 1589 of unknown function (.1.2) AT3G28990 54 / 2e-09 Plant protein 1589 of unknown function (.1) AT1G49700 51 / 3e-07 Plant protein 1589 of unknown function (.1.2) AT1G10657 48 / 4e-07 Plant protein 1589 of unknown function (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019011 [exp] 578 / 0 AT3G61700 212 / 4e-66 Plant protein 1589 of unknown function (.1.2) Lus10004016 [exp] 147 / 2e-42 AT3G61700 253 / 3e-83 Plant protein 1589 of unknown function (.1.2) Lus10030264 [exp] 149 / 1e-41 AT2G46420 346 / 4e-117 Plant protein 1589 of unknown function (.1.2) Lus10031001 [exp] 130 / 2e-35 AT3G10250 392 / 3e-137 Plant protein 1589 of unknown function (.1.2) Lus10035397 [exp] 130 / 1e-33 AT3G23270 526 / 2e-171 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10025300 [exp] 47 / 6e-07 AT5G02580 115 / 5e-35 Plant protein 1589 of unknown function (.1.2) Lus10024432 [exp] 47 / 9e-07 AT5G02580 112 / 1e-33 Plant protein 1589 of unknown function (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G169900 [exp] 182 / 8e-55 AT2G46420 500 / 1e-178 Plant protein 1589 of unknown function (.1.2) Potri.014G097800 [exp] 178 / 3e-53 AT2G46420 503 / 5e-180 Plant protein 1589 of unknown function (.1.2) Potri.015G019500 [exp] 134 / 5e-37 AT3G61700 161 / 1e-46 Plant protein 1589 of unknown function (.1.2) Potri.006G041200 [exp] 133 / 2e-36 AT3G10250 396 / 4e-139 Plant protein 1589 of unknown function (.1.2) Potri.012G001700 [exp] 131 / 6e-36 AT2G46420 165 / 3e-48 Plant protein 1589 of unknown function (.1.2) Potri.016G038100 [exp] 129 / 6e-35 AT3G10250 381 / 5e-133 Plant protein 1589 of unknown function (.1.2) Potri.015G014550 [exp] 100 / 2e-23 AT3G10250 92 / 2e-20 Plant protein 1589 of unknown function (.1.2) Potri.012G001900 [exp] 90 / 2e-20 AT3G61700 82 / 2e-17 Plant protein 1589 of unknown function (.1.2) Potri.010G211500 [exp] 58 / 1e-10 AT3G55240 113 / 3e-34 Plant protein 1589 of unknown function (.1) Potri.010G042300 [exp] 57 / 2e-10 AT1G10657 119 / 1e-36 Plant protein 1589 of unknown function (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09713 [flax] [poplar] A_thal_3526 Plant protein 1589 of unknown function (A_thal_3526)
Representative CDS sequence Show only first row Show all	>Lus10039340 pacid=23175660 polypeptide=Lus10039340 locus=Lus10039340.g ID=Lus10039340.BGIv1.0 annot-version=v1.0 ATGGATTCATCAGCTGCTCCAACAACGAATCACCAGTTCAACAAACAAGAAAACGGTAGGACTACTGTGGATTCTGATCCTATCTCAGCTCCTACAGGCA ATGGTAGGAAAATCACCCGTCAAGATATTGAAACGGTACAGAATTTGATTGAGAGGTGTCTGCAACTGTACGTGAATAAGAATGATGTAGTGAATACTCT CTTGGAGCAAGCTAGGATTGAGCCTGGATTTACAAGCCTAGTATGGCATAAGTTGGAAGATGAGAATGCTGAGTTTTTCAAGGCCTACTATGTGAGGTTA ACTCTCAAAGAACAGATCGACCGGTTCAATCAGTTACTTGAGCGTCAATGCCAGTTGATGAATTATCCTCCGTCTCATCAGAATGGGGTTGCGCAAAATG CCTGTGCAGTTACCAGTTTACCTGCCGAACATGGTATCTTGCACCAGTCTGGGTTCCCATCAACTGTTCATCTGGACTCTGGAGTGGCTAATAGAATCCC GGCGTCAGGAAGTTTCCACCAATTGCAGCTGAACCCTCAAAAAGAGATGATGTCGGAAGGATATGCAACTGTGACAACACTACCCGTCTCACCAATGGGG ACCGTGATGACAACTAATCCTCCATCAGTTACTTCCAACGGCCGCTACTCTCTCGCACCAGCAACAAGTATGGATTCTTTAGTACCTAACTCTCCCTATG CAGCAGCACAATTTCTGCCTCGTGATTTGCATGCTGGAATTGATGGTGGCGGAAGGGACTACTGCGGGATACCTGTTCATCATTCGTTCCCCCGGGTTCC CAGCTGGAACTTAAGCGTCCCAGACTTCGCAAGCATCGGAGTTGAAGAGTTTTTCGTCGATTCCGATCCTCCTTTGAGCCCTCGAGCAGAAGAGGAGAGG CCTGAAGTCGGGGCTTCGTGA
AA sequence Show only first row Show all	>Lus10039340 pacid=23175660 polypeptide=Lus10039340 locus=Lus10039340.g ID=Lus10039340.BGIv1.0 annot-version=v1.0 MDSSAAPTTNHQFNKQENGRTTVDSDPISAPTGNGRKITRQDIETVQNLIERCLQLYVNKNDVVNTLLEQARIEPGFTSLVWHKLEDENAEFFKAYYVRL TLKEQIDRFNQLLERQCQLMNYPPSHQNGVAQNACAVTSLPAEHGILHQSGFPSTVHLDSGVANRIPASGSFHQLQLNPQKEMMSEGYATVTTLPVSPMG TVMTTNPPSVTSNGRYSLAPATSMDSLVPNSPYAAAQFLPRDLHAGIDGGGRDYCGIPVHHSFPRVPSWNLSVPDFASIGVEEFFVDSDPPLSPRAEEER PEVGAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61700			Plant protein 1589 of unknown ...		Lus10039340 [exp]	0	1
AT2G31980		AtCYS2	PHYTOCYSTATIN 2 (.1)		Lus10041257 [exp]	3.0	0.8118
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027937 [exp]	5.2	0.7724
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10039328 [exp]	18.4	0.7311
AT5G10770			Eukaryotic aspartyl protease f...		Lus10026243 [exp]	18.7	0.7418
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10017550 [exp]	19.0	0.7188
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10037760 [exp]	20.2	0.7831
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Lus10029880 [exp]	31.9	0.6822
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012018 [exp]	36.2	0.7248
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Lus10003624 [exp]	45.6	0.7015
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10015060 [exp]	48.3	0.7076

Compare expression of checked genes

Lus10039340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.