Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53140 446 / 3e-155 Protein phosphatase 2C family protein (.1) AT4G31750 323 / 9e-109 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 323 / 5e-108 Protein phosphatase 2C family protein (.1) AT5G24940 317 / 1e-104 Protein phosphatase 2C family protein (.1) AT1G43900 281 / 1e-91 Protein phosphatase 2C family protein (.1) AT1G34750 184 / 3e-55 Protein phosphatase 2C family protein (.1) AT1G78200 182 / 2e-54 Protein phosphatase 2C family protein (.1.2) AT2G20630 171 / 5e-50 PIA1 PP2C induced by AVRRPM1 (.1.2) AT4G28400 170 / 1e-49 Protein phosphatase 2C family protein (.1) AT1G07160 162 / 1e-45 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019012 [exp] 716 / 0 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10014926 [exp] 466 / 5e-165 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10020104 [exp] 316 / 6e-106 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 310 / 5e-104 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 296 / 9e-99 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 296 / 1e-98 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10029745 [exp] 239 / 6e-73 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 236 / 3e-72 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10020924 [exp] 173 / 9e-51 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G019200 [exp] 474 / 2e-167 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 464 / 9e-164 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.018G013900 [exp] 320 / 1e-107 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.006G267600 [exp] 319 / 1e-107 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.005G186001 [exp] 296 / 8e-99 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.002G074500 [exp] 294 / 2e-97 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 179 / 4e-53 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 174 / 3e-51 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.017G013300 [exp] 169 / 2e-49 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.001G278500 [exp] 167 / 2e-47 AT2G30020 451 / 2e-158 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10039341 pacid=23175464 polypeptide=Lus10039341 locus=Lus10039341.g ID=Lus10039341.BGIv1.0 annot-version=v1.0 ATGGTGGTTGGCAGAAGCTGCCTTAGAAGTGTGGTTGTTCAAGCCGTGCTACTCTCTCGAACAAGGCTGCTCACCTGTAGCATTGCGAGGAGTTCTTCTT CGCCTACTGTTGGCCTTCGCTTCATTAATAACAATACGTGGAGATCTTCTTTTTTCCCTGTTCGTACAATCATGATGGTGGATTCTGAATCGGCTGCCGC CCCTGCCAAATCGGGACAAGCCGTGGGGGGTTTGCCGGCGGAGAAAGAAGATGGGGTTGGATATGTTAGCGGAGGGCATAAAAGTGAAGATGGGAAATTG AGCTGTGGTTATTCAAGTTTCAGAGGGAAGAGAGCAACCATGGAGGACTTCTATGATATCAAAACTACAAAGATCAATGAGAAACCGGTCTGCATGTTTG GAATATTTGATGGTCATGGTGGTTCTCGGGCATCCGAATATTTAAAGCAACACCTGTTTGATAATGTATTAAAGCATCCACAATTCATGACAGATACCAA AGCAGCTATAAGTACGATTGATATCTTTCCTGATGAACGTGCAACATACCAACAGACCGATGCCGACTTTTTGGAATCTGAAAAGGACACGTACAGAGAT GATGGTTCTACTGCTTCAACAGCAGTCCTTGTAGGCGACCATCTATATGTTGCCAATGTTGGAGATTCACGAACTGTGGTATCCAAGGCTGGAAAAGCAA TTGCTCTCTCAGAGGATCATAAACCTAATAGAAGTGATGAGCGGAAGAGAATTGAAAGTGCTGGAGGTGTAGTGATGTGGGCAGGCACATGGAGGGTAGG AGGTGTATTGGCTATGTCACGTGCGTTCGGTAACCGTATGTTAAAGCAATACATCGTTGCAGAACCAGAAATCCAGGTAATCCTCCAAACTCAGAGTTTT AGCTTCCCACCAGAAGCTTTTACTAGTGAACCAGAATCGGAAGTAGGGGTCTCAACCATTCATAGATTGCTTCCATTTGCGATGATCAATACAAGCATGG CCTATGGCTTCCATTTGCAGGATCTGAAGTTAGATGACGAATGCGAACTGCTAGTCCTTGCCAGTGACGGATTATGGGACGTTGTACCAAATGAAGATGC CATATCGCTTGCTCGATCGGAGGAAGAACCCGAGGCGGCAGCGAAGAAGCTCGTGGAGACTGCTTTTACAAAGGGCAGCGCCGACAACATTACTTGCATT GTCGTGAAAATGCACCGTGGTAATAAGGCGGCGGCGGCTAAGGCAGATTCACCACCTAATCCTCCTCCGAAAGATAACGAGAAGGTTACTTAA
AA sequence Show only first row Show all	>Lus10039341 pacid=23175464 polypeptide=Lus10039341 locus=Lus10039341.g ID=Lus10039341.BGIv1.0 annot-version=v1.0 MVVGRSCLRSVVVQAVLLSRTRLLTCSIARSSSSPTVGLRFINNNTWRSSFFPVRTIMMVDSESAAAPAKSGQAVGGLPAEKEDGVGYVSGGHKSEDGKL SCGYSSFRGKRATMEDFYDIKTTKINEKPVCMFGIFDGHGGSRASEYLKQHLFDNVLKHPQFMTDTKAAISTIDIFPDERATYQQTDADFLESEKDTYRD DGSTASTAVLVGDHLYVANVGDSRTVVSKAGKAIALSEDHKPNRSDERKRIESAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQYIVAEPEIQVILQTQSF SFPPEAFTSEPESEVGVSTIHRLLPFAMINTSMAYGFHLQDLKLDDECELLVLASDGLWDVVPNEDAISLARSEEEPEAAAKKLVETAFTKGSADNITCI VVKMHRGNKAAAAKADSPPNPPPKDNEKVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53140			Protein phosphatase 2C family ...		Lus10039341 [exp]	0	1
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10000537 [exp]	1.0	0.8650
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	2.0	0.8583
AT1G24560			unknown protein		Lus10038257 [exp]	2.4	0.8640
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039479 [exp]	5.3	0.8527
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	5.5	0.8565
AT3G25585		AAPT2, ATAAPT2	aminoalcoholphosphotransferase...		Lus10034410 [exp]	5.7	0.8239
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	6.0	0.8638
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10013052 [exp]	6.2	0.8245
AT5G32440			Ubiquitin system component Cue...		Lus10039988 [exp]	6.3	0.8527
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	7.1	0.8571

Compare expression of checked genes

Lus10039341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.