Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09680 246 / 3e-82 RLF reduced lateral root formation (.1.2) AT5G53560 69 / 1e-14 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT1G26340 68 / 4e-14 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT2G32720 67 / 1e-13 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G48810 63 / 3e-12 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT2G46650 62 / 8e-12 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT3G61580 59 / 1e-09 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) AT1G77760 58 / 3e-09 GNR1, NIA1 nitrate reductase 1 (.1) AT1G37130 57 / 4e-09 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT2G46210 55 / 2e-08 AtSLD2 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019013 [exp] 328 / 2e-113 AT5G09680 216 / 1e-70 reduced lateral root formation (.1.2) Lus10011858 [exp] 64 / 2e-12 AT2G32720 211 / 5e-72 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10022794 [exp] 63 / 3e-12 AT2G32720 211 / 1e-71 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10008838 [exp] 62 / 6e-12 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10000651 [exp] 62 / 1e-11 AT1G26340 194 / 7e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10043137 [exp] 61 / 2e-11 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10032612 [exp] 61 / 2e-11 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10022357 [exp] 61 / 2e-11 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10036973 [exp] 61 / 2e-11 AT1G26340 193 / 8e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G263800 [exp] 268 / 1e-90 AT5G09680 258 / 1e-87 reduced lateral root formation (.1.2) Potri.002G242500 [exp] 67 / 9e-14 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.012G024600 [exp] 59 / 6e-11 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.010G156900 [exp] 57 / 4e-10 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.014G019200 [exp] 56 / 9e-10 AT5G48810 115 / 8e-34 ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) Potri.005G172400 [exp] 59 / 1e-09 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 59 / 1e-09 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.002G165800 [exp] 58 / 2e-09 AT2G46210 728 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.015G007600 [exp] 56 / 2e-09 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.017G054300 [exp] 56 / 2e-09 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Lus10039342 pacid=23175504 polypeptide=Lus10039342 locus=Lus10039342.g ID=Lus10039342.BGIv1.0 annot-version=v1.0 ATGTTTCAAAATTTGACTGGGCCGTTTCTTTTGACTGACGAGGAGAAAAAACGGTCAGACCGGCAGGAAGAGAAAATCCGTAACAAAGCAAAGTTGCAGA ATAAGAAGAATCAGCCAACGAACTTTGATCGGAGGAAAAGTAGTCGAGGAGGCTCTACAGCAGCCTCGAATCCGAAGGTGGGGGGCGGGGAGCATTTCTC GGTTAACCTTCCGTCCAGACGTTTGTTTGGTCTGATTCAGGTACCTTCGTCAGTCGACGGAGATGATGTTAAGGAAGAGAAGACGCTGGCTTCAGAGATT GGTGGGATAACGATCAAAGATGAAAAGTCAAATGGCTTGGATAGGAGCATTGCATCAAGCTCTAAGGAGGAGAAAGTTTCTGGGACACTGTCGTTCACTA TTGTCGATAAATCGTCACCGCAACAACAACAGCCTAGTTCCAGACAAGTAGCATCTAGAACTGCTGAGACTTCTGCTAAGATTAAGCAACCTGCAAAGAA GCCTGTAGCCAGAGCTAAGGTACCGTTTGAGAAGGGGTACAGCCAAATGGACTGGCTTAACCTAACTCGAACACATCCTGATCTTGCAGGATTGAAAGGA GAATCGAATAGGAGATTGATTCCGTTGAGTGAAGTTAAACAACACCGATCAGAAGGTTCCATGTGGACAGTACTGAAAGGCCGTGTATACAATTTGACTC CATACATGAAGTTTCATCCTGGAGGTGAGGATATGCTCTTGAAGGCAGTTGGCAAGGACTGCACAGCTTTATTCAATAAATACCATGCCTGGGTGAATGC AGAATTCTTGATGGAGAAATGCCTTGTTGGGATGCTAGATGAGAGTCGGTGA
AA sequence Show only first row Show all	>Lus10039342 pacid=23175504 polypeptide=Lus10039342 locus=Lus10039342.g ID=Lus10039342.BGIv1.0 annot-version=v1.0 MFQNLTGPFLLTDEEKKRSDRQEEKIRNKAKLQNKKNQPTNFDRRKSSRGGSTAASNPKVGGGEHFSVNLPSRRLFGLIQVPSSVDGDDVKEEKTLASEI GGITIKDEKSNGLDRSIASSSKEEKVSGTLSFTIVDKSSPQQQQPSSRQVASRTAETSAKIKQPAKKPVARAKVPFEKGYSQMDWLNLTRTHPDLAGLKG ESNRRLIPLSEVKQHRSEGSMWTVLKGRVYNLTPYMKFHPGGEDMLLKAVGKDCTALFNKYHAWVNAEFLMEKCLVGMLDESR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09680		RLF	reduced lateral root formation...		Lus10039342 [exp]	0	1
AT4G09670			Oxidoreductase family protein ...		Lus10005674 [exp]	1.4	0.9519
AT2G48020			Major facilitator superfamily ...		Lus10027975 [exp]	2.0	0.9494
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012632 [exp]	2.6	0.9442
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10039616 [exp]	3.0	0.9430
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	4.0	0.9513
AT5G19930			Protein of unknown function DU...		Lus10033068 [exp]	6.3	0.9352
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10041148 [exp]	6.9	0.9408
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	7.7	0.9499
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006353 [exp]	13.0	0.9389
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	15.0	0.9153

Compare expression of checked genes

Lus10039342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.