Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22560 151 / 1e-46 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G32030 142 / 9e-43 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G32020 131 / 1e-38 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010569 [exp] 360 / 6e-129 AT3G22560 144 / 7e-44 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10006668 [exp] 213 / 9e-71 AT2G32030 122 / 2e-35 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10032323 [exp] 183 / 1e-58 AT2G32030 107 / 6e-29 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10021914 [exp] 161 / 1e-50 AT3G22560 216 / 2e-72 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10007013 [exp] 151 / 7e-43 AT5G64300 506 / 4e-174 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10010570 [exp] 129 / 1e-37 AT2G32030 220 / 7e-74 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10039344 [exp] 124 / 4e-36 AT2G32030 236 / 4e-80 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10024705 [exp] 107 / 5e-30 AT2G32030 58 / 2e-11 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10041199 [exp] 94 / 6e-25 AT3G22560 128 / 7e-39 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G154700 [exp] 179 / 1e-57 AT3G22560 177 / 3e-57 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.008G154800 [exp] 155 / 2e-48 AT3G22560 225 / 3e-76 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.010G085600 [exp] 138 / 2e-41 AT2G32030 223 / 6e-75 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.007G102900 [exp] 84 / 6e-21 AT3G22560 96 / 9e-26 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10039343 pacid=23175710 polypeptide=Lus10039343 locus=Lus10039343.g ID=Lus10039343.BGIv1.0 annot-version=v1.0 ATGGCCGAGTCCGTTGAACAAATTTGCTCTCGGTTAACCCTCCGACCGTTCACACCATCCGACGTGGATGACGTGTGGAGCTACGCCACCAACCCAGAGC TGACGCGTTACACGCCGTGGAGGAAGTTCAACTCCAAGGAAGAGCTTTCATCCTACATACAGAATTACTGCATTCCCCACCCGTACTGCCGGTCCGTGTG CATTGACGACCGGTCAATCGGGCTGGTAACGGTGTGTCCCGGGGTCCGCGGGGACGAAAGGAGGCGGGCGGACATAGGAGGGGTCGGGTCGCCGGAGTAT TGGTCGAAGGGAATCGGGAAGAAAGTTGTGGAGATGGCTGTGGTGGAAGCCTTGAAGGTGTTTCCGGAGATGGTGAGGCTGCAGGCGGCTACTGACGTGG AGAACAAAGGGGCGCAGAAGGTGTTGGAGGCAGTTGGGTTTAAGAAGGATGGTGTGTTGAAGAAGTATATGTTTCATAGAGGCGAGGATAGGGATGTGGC GATTTATAGTCTGTTGATTGGTCATCGGCCGCCTGCTTTGGTTGACAACTGGCCAGGGCTGATGATAAGATCCGTGTTGTGA
AA sequence Show only first row Show all	>Lus10039343 pacid=23175710 polypeptide=Lus10039343 locus=Lus10039343.g ID=Lus10039343.BGIv1.0 annot-version=v1.0 MAESVEQICSRLTLRPFTPSDVDDVWSYATNPELTRYTPWRKFNSKEELSSYIQNYCIPHPYCRSVCIDDRSIGLVTVCPGVRGDERRRADIGGVGSPEY WSKGIGKKVVEMAVVEALKVFPEMVRLQAATDVENKGAQKVLEAVGFKKDGVLKKYMFHRGEDRDVAIYSLLIGHRPPALVDNWPGLMIRSVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10039343 [exp]	0	1
AT5G55530			Calcium-dependent lipid-bindin...		Lus10032578 [exp]	1.0	0.8075
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10010569 [exp]	2.0	0.7880
AT1G16350			Aldolase-type TIM barrel famil...		Lus10000276 [exp]	2.4	0.7920
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10011408 [exp]	13.6	0.7889
					Lus10028604 [exp]	18.4	0.6690
AT4G31130			Protein of unknown function (D...		Lus10030037 [exp]	24.2	0.7459
AT3G46600	GRAS		GRAS family transcription fact...		Lus10040789 [exp]	28.9	0.7515
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10021740 [exp]	29.0	0.7212
					Lus10013609 [exp]	35.1	0.6683
AT1G16740			Ribosomal protein L20 (.1)		Lus10006327 [exp]	35.3	0.7135

Compare expression of checked genes

Lus10039343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.