Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32030 217 / 1e-72 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G32020 202 / 5e-67 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT3G22560 143 / 1e-43 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010570 [exp] 249 / 1e-85 AT2G32030 220 / 7e-74 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10021914 [exp] 166 / 1e-52 AT3G22560 216 / 2e-72 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10039346 [exp] 142 / 6e-44 AT2G32030 116 / 6e-34 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10039343 [exp] 125 / 3e-36 AT3G22560 151 / 1e-46 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10010569 [exp] 120 / 2e-34 AT3G22560 144 / 7e-44 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10006668 [exp] 115 / 2e-32 AT2G32030 122 / 2e-35 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10041199 [exp] 91 / 6e-24 AT3G22560 128 / 7e-39 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10032323 [exp] 89 / 6e-22 AT2G32030 107 / 6e-29 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10007013 [exp] 85 / 2e-19 AT5G64300 506 / 4e-174 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G085600 [exp] 249 / 1e-85 AT2G32030 223 / 6e-75 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.008G154800 [exp] 182 / 5e-59 AT3G22560 225 / 3e-76 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.008G154700 [exp] 171 / 2e-54 AT3G22560 177 / 3e-57 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.007G102900 [exp] 72 / 2e-16 AT3G22560 96 / 9e-26 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10039344 pacid=23175673 polypeptide=Lus10039344 locus=Lus10039344.g ID=Lus10039344.BGIv1.0 annot-version=v1.0 ATGGAGCCAGCTGTAGAAAATGAAATCTCACTCCGGCCACTGGAAGCGTCGGACATCGACGATTTCATGGTGTGGGCGACCGACGACAAAGTGGCACGAT TCTGCACGTGGGAGCCGTACTCCAGCAAAGAGGAAGGCCTGGATTACATAACGAGAACTGTTCTTCCCCACCCGTGGTTCAAAGCAATCTGCATCAACGG CAGGCCAATCGGCGCCATTTCAGTGACCAAGAATACAGGGGGAGACGCTTGCCGAGGGGAGCTAGGGTACGTGCTGGCGTCTGGATATTGGGGGAAAGGG ATTGCGACGGCGGCGGTGAGGATGGTGGCGGAGGGGATATTTGAGGAGCGGCCGGAGTTGGAACGGTTAGAGGCGCTGGTGGATGTGGAGAACGTTGGGT CGCAGAGGGTATTGGAGAAAGTTGGGTTTGTGAAGGAAGGTGTTATGAGGAAATTCGTTGTATTAAAAGGGAGGTCTCGAGATATGGTTATGTTTAGCCT TTTGTCTACTGATGTTGTGAGTTAG
AA sequence Show only first row Show all	>Lus10039344 pacid=23175673 polypeptide=Lus10039344 locus=Lus10039344.g ID=Lus10039344.BGIv1.0 annot-version=v1.0 MEPAVENEISLRPLEASDIDDFMVWATDDKVARFCTWEPYSSKEEGLDYITRTVLPHPWFKAICINGRPIGAISVTKNTGGDACRGELGYVLASGYWGKG IATAAVRMVAEGIFEERPELERLEALVDVENVGSQRVLEKVGFVKEGVMRKFVVLKGRSRDMVMFSLLSTDVVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10039344 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10010223 [exp]	1.0	0.8924
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021185 [exp]	2.0	0.8894
AT4G39830			Cupredoxin superfamily protein...		Lus10022504 [exp]	2.4	0.8778
AT3G60450			Phosphoglycerate mutase family...		Lus10009779 [exp]	2.8	0.8715
AT4G32790			Exostosin family protein (.1)		Lus10000608 [exp]	3.5	0.8419
AT2G26530		AR781	Protein of unknown function (D...		Lus10032766 [exp]	5.0	0.8471
AT2G39650			Protein of unknown function (D...		Lus10040293 [exp]	6.0	0.8267
					Lus10005523 [exp]	6.3	0.8290
AT2G18210			unknown protein		Lus10025998 [exp]	8.1	0.8128
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10028251 [exp]	8.1	0.8167

Compare expression of checked genes

Lus10039344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.