Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16110 122 / 4e-33 GARP ARR2 response regulator 2 (.1) AT3G16857 122 / 5e-33 GARP ARR1 response regulator 1 (.1.2) AT2G25180 105 / 7e-27 GARP ARR12 response regulator 12 (.1) AT4G31920 98 / 2e-24 GARP ARR10 response regulator 10 (.1) AT1G67710 98 / 2e-24 GARP ARR11 response regulator 11 (.1) AT2G01760 96 / 6e-24 GARP ARR14 response regulator 14 (.1) AT5G58080 74 / 5e-16 GARP ARR18 response regulator 18 (.1) AT1G49190 64 / 2e-12 GARP ARR19 response regulator 19 (.1.2) AT5G49240 56 / 1e-09 GARP APRR4 pseudo-response regulator 4 (.1) AT2G46790 49 / 3e-07 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016846 [exp] 144 / 8e-41 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10037719 [exp] 142 / 4e-40 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10005340 [exp] 105 / 4e-27 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 105 / 4e-27 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10011389 [exp] 99 / 5e-25 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10006446 [exp] 99 / 7e-25 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10025044 [exp] 96 / 7e-24 AT4G31920 220 / 6e-65 response regulator 10 (.1) Lus10019058 [exp] 86 / 3e-20 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10036303 [exp] 83 / 6e-19 AT2G25180 294 / 4e-92 response regulator 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G001000 [exp] 133 / 7e-37 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G213500 [exp] 128 / 6e-35 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G135500 [exp] 109 / 2e-28 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 103 / 2e-26 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.008G181000 [exp] 100 / 5e-25 AT1G67710 383 / 5e-127 response regulator 11 (.1) Potri.010G053100 [exp] 100 / 5e-25 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.018G111300 [exp] 96 / 1e-23 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 95 / 3e-23 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.006G262100 [exp] 86 / 4e-20 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G021300 [exp] 79 / 1e-17 AT2G25180 364 / 2e-117 response regulator 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10039345 pacid=23175567 polypeptide=Lus10039345 locus=Lus10039345.g ID=Lus10039345.BGIv1.0 annot-version=v1.0 ATGAATCCCCTTAATGGATTGGAAAGGGATCCGCTTCCAGGATCACCTGAAAATCCGGCGGACCAGTGGCAGATCAGTTCCCCGCCGGGGCTGCGTGTTA TGGTCGTTGATGAGGATCTCACTTGCGTCGTGATTCTGGAGAAGATGCTCAGAACCTGTCTTTATCGAGTGAAGAAATGCAGAAGAGCGGAGGAGGCCTT ATCAATGTTGAGAGAGAACAGAAGTGGGGACGATATAGTGATAAGTGATGTACATATGCCAGACATATGGATGGGTTTGTGCTGCTGGAGATTGTTGGTC TTGAAATGGATCTGCCTGTTATCTAGTGCGGTAATGAAGGGAATCACTTATGGTGCTTGTGACGATCTGATAAAGCCAGTTCGGATTGAAGTTTTGAAGA ATACTAGATTCGATGGTCGCACGATGTTACAAATATTTTATTCGAATGTTATGTGA
AA sequence Show only first row Show all	>Lus10039345 pacid=23175567 polypeptide=Lus10039345 locus=Lus10039345.g ID=Lus10039345.BGIv1.0 annot-version=v1.0 MNPLNGLERDPLPGSPENPADQWQISSPPGLRVMVVDEDLTCVVILEKMLRTCLYRVKKCRRAEEALSMLRENRSGDDIVISDVHMPDIWMGLCCWRLLV LKWICLLSSAVMKGITYGACDDLIKPVRIEVLKNTRFDGRTMLQIFYSNVM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10039345 [exp]	0	1
					Lus10006296 [exp]	1.7	1.0000
					Lus10012669 [exp]	2.8	1.0000
					Lus10013504 [exp]	3.5	1.0000
					Lus10033834 [exp]	3.7	1.0000
					Lus10026042 [exp]	4.0	1.0000
AT2G18560			UDP-Glycosyltransferase superf...		Lus10008248 [exp]	4.0	1.0000
					Lus10032814 [exp]	4.9	1.0000
AT3G44460	bZIP	DPBF2, ATBZIP67	basic leucine zipper transcrip...		Lus10019542 [exp]	5.1	1.0000
					Lus10016136 [exp]	5.5	1.0000
AT4G35500			Protein kinase superfamily pro...		Lus10016690 [exp]	7.4	1.0000

Compare expression of checked genes

Lus10039345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.