Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22590 295 / 3e-100 PHP, CDC73 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010571 [exp] 337 / 5e-117 AT3G22590 526 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10021913 [exp] 317 / 1e-109 AT3G22590 516 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10041198 [exp] 317 / 3e-109 AT3G22590 547 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G085500 [exp] 297 / 2e-101 AT3G22590 555 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Potri.008G155000 [exp] 282 / 1e-97 AT3G22590 385 / 3e-134 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF05179 [flax] [poplar] CDC73_C RNA pol II accessory factor, Cdc73 family, C-terminal
Representative CDS sequence Show only first row Show all	>Lus10039347 pacid=23175712 polypeptide=Lus10039347 locus=Lus10039347.g ID=Lus10039347.BGIv1.0 annot-version=v1.0 ATGCCGAAACTCAGAGGGAAAACTGGTGAAGGAGTGCCTATAATTTTAGTTCCCAGCGCATTCCAGACTTTGATTACGATTTACAATGTGAAGGACTTTC TGGAGGATGGGGTTTACATACCTGCAGATGTGAAGGTGAAACAGATGAAAGGGGCTAAGCCTGAATGCGTGACTGTGCATAAGAAGTTCAATACTGATAG AAACAGAGTGATGACTGCTTATGAAGTGAGGGATAAACCTACTGCACTTAAGCCTGATGATTGGGAAAGAGTTGTGGCTGTTTTTGTGGTGGGGAAGGAG TGGCAGTTCAAGGATTGGCCTTTCAAGGATCATTTGGAGATATTTAATAACATTATTGGGTTCTTTATGCGGTTTGAAGATGATAGCGTAGATTCTGCGA AGACTGTTAAACAATGGAATACAAGTAAGAACAAGCGGCATCAGGACCGGGCTCCTGCATTGGAGGTGTGGGAAAGGCTAGAAGAATTTGTGCGCTCGCG CTTACATGCTTGA
AA sequence Show only first row Show all	>Lus10039347 pacid=23175712 polypeptide=Lus10039347 locus=Lus10039347.g ID=Lus10039347.BGIv1.0 annot-version=v1.0 MPKLRGKTGEGVPIILVPSAFQTLITIYNVKDFLEDGVYIPADVKVKQMKGAKPECVTVHKKFNTDRNRVMTAYEVRDKPTALKPDDWERVVAVFVVGKE WQFKDWPFKDHLEIFNNIIGFFMRFEDDSVDSAKTVKQWNTSKNKRHQDRAPALEVWERLEEFVRSRLHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10039347 [exp]	0	1
AT3G29280			unknown protein		Lus10025638 [exp]	37.5	0.7305

Compare expression of checked genes

Lus10039347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.