Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010576 [exp] 0 / 1 AT4G14805 87 / 5e-21 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039350 pacid=23175551 polypeptide=Lus10039350 locus=Lus10039350.g ID=Lus10039350.BGIv1.0 annot-version=v1.0 ATGGCTAACTTCCACTCCCTGGAGACTCTCTGTGCAGGTTTTCCTCCTCCTCCAAGCTCATCGAACTCAGTAGGAGCGCCGACGTCATCTGACTCTGGTT CAGATGATTATACGTCTCCTGAGAATGATCCGCCAACTGAACCTACTGAAGTTCCAACCGTATCTGGTGCTCATAATACGACACTTGCTCCCCCGGAACC ACCTGCTGAAGCTGGTAAACCTGCCCCTGATGCATCATCTACACCAAGTCCCTCAGATGCAAATGCTCAAGTCTCATCGCCAACTAGCTTCATCAATGGC AGCAGAATTGAGCTCAATCCCGACTTGGTTTTTCCACGGAGCTGCTGCCCTTTAATTGCTTTTGTAACTTGTTTGATGCTACACAGATGA
AA sequence Show only first row Show all	>Lus10039350 pacid=23175551 polypeptide=Lus10039350 locus=Lus10039350.g ID=Lus10039350.BGIv1.0 annot-version=v1.0 MANFHSLETLCAGFPPPPSSSNSVGAPTSSDSGSDDYTSPENDPPTEPTEVPTVSGAHNTTLAPPEPPAEAGKPAPDASSTPSPSDANAQVSSPTSFING SRIELNPDLVFPRSCCPLIAFVTCLMLHR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039350 [exp]	0	1
AT1G70570			anthranilate phosphoribosyltra...		Lus10006201 [exp]	2.4	0.9287
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	4.6	0.9375
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	6.8	0.9337
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10010427 [exp]	9.7	0.9233
AT1G74790			catalytics (.1)		Lus10033116 [exp]	10.0	0.9255
AT1G68400			leucine-rich repeat transmembr...		Lus10040653 [exp]	11.0	0.9158
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	16.4	0.9170
AT5G51500			Plant invertase/pectin methyle...		Lus10031140 [exp]	16.9	0.8977
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10015252 [exp]	18.0	0.8996
AT2G39710			Eukaryotic aspartyl protease f...		Lus10004713 [exp]	19.4	0.9033

Compare expression of checked genes

Lus10039350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.