Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32010 831 / 0 CVL1 CVP2 like 1 (.1.2) AT1G05470 801 / 0 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT3G63240 627 / 0 DNAse I-like superfamily protein (.1) AT5G65090 340 / 9e-111 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT5G04980 326 / 2e-105 DNAse I-like superfamily protein (.1.2) AT2G37440 322 / 7e-105 DNAse I-like superfamily protein (.1.2) AT4G18010 285 / 6e-88 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G71710 285 / 3e-87 DNAse I-like superfamily protein (.1.2) AT2G01900 273 / 1e-85 DNAse I-like superfamily protein (.1) AT1G34120 270 / 4e-82 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006597 [exp] 668 / 0 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10006904 [exp] 648 / 0 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10014684 [exp] 556 / 0 AT3G63240 635 / 0.0 DNAse I-like superfamily protein (.1) Lus10042619 [exp] 537 / 0 AT3G63240 587 / 0.0 DNAse I-like superfamily protein (.1) Lus10008934 [exp] 335 / 6e-112 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 339 / 4e-110 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 337 / 2e-109 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10033398 [exp] 335 / 4e-108 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10025305 [exp] 333 / 2e-107 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G155700 [exp] 938 / 0 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G084300 [exp] 925 / 0 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.002G050000 [exp] 740 / 0 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.005G212700 [exp] 733 / 0 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G247800 [exp] 348 / 2e-113 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.005G078000 [exp] 346 / 9e-112 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 346 / 1e-111 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 332 / 2e-107 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.001G145900 [exp] 294 / 4e-91 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.005G197800 [exp] 291 / 7e-90 AT1G71710 658 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10039352 pacid=23175688 polypeptide=Lus10039352 locus=Lus10039352.g ID=Lus10039352.BGIv1.0 annot-version=v1.0 ATGAGTAATGAGAACTCAAAGAAAAGCAAGGTTTCTTTCATTTCTCCTCGTCTCCTTCTCAGACAATTTTTCACTTCTGTTTTTGTTCCTAACGGTATCG TGACGACGCTCTCATGGTCCAAGAAGATGGTCAGGAAATGGTTCAATATCAAGAGCAAAAATGAGGAGTTCCAAGCTGATGATGTTTACGGAGGTGGAGA GGTTGAGTATCGAACTAGCTTCTCAGAAAGGGAGCCATGTACAATTAAAAAGAGCAAGACAGAGAAATTGAGCAAGAATCCAGACCCGGCCAGACGGGCA AGAATGAATCTTGACCACCCGAGGATCATTGATGTACAGAACCACAGCATCTTTGTAGCTACTTGGAATGTGGCTGGAAGGTCTCCACCGAGCAATTTGA GTCTCGATGATTGGCTTCATGCTTCTCCTCCAGCTGACATCTATGTTCTCGGGTTCCAAGAAATAGTCCCTTTGAATGCTGGTAATGTTCTTGGAGCAGA AGACAATGGGCCGGCAAAGAAATGGCTGGCTCTGATTAGGAAGACACTGAATAATCTTCCTGGGACTAGCGGCAGTAGTGGTGGTGGCTACTACACTCCA TCTCCAATTCCTGAGCCTATAGTGGAAATGGATGCAGATTTCGAGGGATCGTCCAGGCAAAAGAACCCATCTTTCTATGCTCGAAGATCATTTCAGACTC CCAGCAGCTGGAGAATGGAAAACGACCCTTCAATCCCACAGCCAAGGCTGGATAGGCAAGGCTGGATAGGAGGTTCAGTGTTTGTGATAGGGCAGAGTGA CTATGATCAAAGCAACAGATGGGGTCACAGGCCTAGTACTGATTACTCGAGGGCCAGCGACTACTCCAGGCCTAGTGATTACTCTAGGTGGGGCTCTTCG GATGATGATAACGGCCCTGGGGATTCACCAAGTACTGTTTTGCAGTCTCCAATGTCATATGCTGCTTATGGTGGTGGTTCTGGATCGAGCGAAGATGGAT ATAGGAGGCCTGGATACTCGAGATATTGTCTGGTGGCAAGTAAACAGATGGTGGGTGTGTTTCTCACAATCTGGGTGAGGAGTGAATTAAGAGATCACGT TAAAAACATGAAAGTTTCTTGTGTTGGCAGAGGCTTGATGGGTTACCTCGGAAACAAGGGGTCAATTTCAGTCAGTATGTCCCTGCATCAAACTACCTTC TGCTTCGTTTGCACTCATTTGACTTCTGGACAGAAAGAGGGCGATGAGCTCAGGAGGAATGCAGATGTAATGGAGATTCTTAAGAAAACAAGGTTTCCAC GCGTTACCAGCGAATGTCATGGAAAGAACCCTGAAACAATCCTCCAGCATGACCGAGTGATTTGGCTGGGGGATCTTAATTACCGTATTGCTCTTTCGTA TCGATCTGCCAAGGCACTGGTGGAGATGCAGAACTGGAGGGCATTGTTAGAGAATGATCAGCTACGAATAGAGCAAAGGAGAGGGCGTGTGTTCAGGGGA TGGCGTGAAGGAAAAATCTATTTCCCACCAACATACAAATACTCAACTAATTCGGACAGATATGCAGGAGGTGACATGCACCCTAAGGAGAAACGCCGAA CACCTGCTTGGTGCGACAGAATTTTATGGCATGGAGAAGGCCTCCAGCAGGTATCTTATGTTCGAGGAGAATCGAGATTCTCGGATCATAGGCCAGTTTA CGGTATATTTTGGGCAGAGGTGGAATCCGACCACGATCGGTTGAAGAGAAGCACTAGTTATTCTAGTTCCAGGATTGAAGTAGAAGAGCTTTTACCTTAC TCACATGGCTACACAGAGTTGAACTTCTTTTGA
AA sequence Show only first row Show all	>Lus10039352 pacid=23175688 polypeptide=Lus10039352 locus=Lus10039352.g ID=Lus10039352.BGIv1.0 annot-version=v1.0 MSNENSKKSKVSFISPRLLLRQFFTSVFVPNGIVTTLSWSKKMVRKWFNIKSKNEEFQADDVYGGGEVEYRTSFSEREPCTIKKSKTEKLSKNPDPARRA RMNLDHPRIIDVQNHSIFVATWNVAGRSPPSNLSLDDWLHASPPADIYVLGFQEIVPLNAGNVLGAEDNGPAKKWLALIRKTLNNLPGTSGSSGGGYYTP SPIPEPIVEMDADFEGSSRQKNPSFYARRSFQTPSSWRMENDPSIPQPRLDRQGWIGGSVFVIGQSDYDQSNRWGHRPSTDYSRASDYSRPSDYSRWGSS DDDNGPGDSPSTVLQSPMSYAAYGGGSGSSEDGYRRPGYSRYCLVASKQMVGVFLTIWVRSELRDHVKNMKVSCVGRGLMGYLGNKGSISVSMSLHQTTF CFVCTHLTSGQKEGDELRRNADVMEILKKTRFPRVTSECHGKNPETILQHDRVIWLGDLNYRIALSYRSAKALVEMQNWRALLENDQLRIEQRRGRVFRG WREGKIYFPPTYKYSTNSDRYAGGDMHPKEKRRTPAWCDRILWHGEGLQQVSYVRGESRFSDHRPVYGIFWAEVESDHDRLKRSTSYSSSRIEVEELLPY SHGYTELNFF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10039352 [exp]	0	1
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10006597 [exp]	1.0	0.9396
AT5G62960			unknown protein		Lus10042109 [exp]	2.0	0.8638
AT5G23100			Protein of unknown function, D...		Lus10027241 [exp]	9.0	0.7961
AT1G50410			SNF2 domain-containing protein...		Lus10041008 [exp]	10.4	0.8590
AT2G23950			Leucine-rich repeat protein ki...		Lus10019963 [exp]	10.5	0.8409
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10030772 [exp]	11.0	0.7893
AT2G24530			unknown protein		Lus10026942 [exp]	11.0	0.8424
AT5G28650	WRKY	ATWRKY74, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10042538 [exp]	12.0	0.8331
AT3G56690		CIP111	Cam interacting protein 111 (....		Lus10002639 [exp]	13.8	0.8019
AT1G09320			agenet domain-containing prote...		Lus10010903 [exp]	14.5	0.8012

Compare expression of checked genes

Lus10039352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.