Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027613 [exp] 627 / 0 ND / Lus10025008 [exp] 252 / 7e-76 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10007415 [exp] 249 / 2e-75 ND / Lus10006886 [exp] 218 / 2e-64 ND / Lus10027612 [exp] 208 / 7e-58 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10007416 [exp] 194 / 2e-56 ND / Lus10017801 [exp] 134 / 1e-35 ND / Lus10023004 [exp] 98 / 5e-23 ND / Lus10026444 [exp] 101 / 1e-22 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039353 pacid=23175555 polypeptide=Lus10039353 locus=Lus10039353.g ID=Lus10039353.BGIv1.0 annot-version=v1.0 ATGTCTGACACGGTGAAGGGATGCCTTCTCGAGTGCAGGGCCGCCGCCCACCTCCATAATTCTTCCCCTTTTTCCACTGCTCTCCCATCAAGCCCATGTC TTCACTCCCTCTCTCTTAACACAAATCCTTCCTCTTCAATCATCTCCACCCATTTCTTGCGCACTCTACCAGCAGCTCCCGGGTTCTACCAACAGCCCAC ATCGATGATGCTCCGTGACCTTTCGCCGGAAAACATGCCACCCCACTTGCACATGCGCCTCCTACACCTTTGGAAACTTGGGAAGCCTGGCGAACCCGGT AATTTTGACGCGCTCGGCACGCTATGGACCGATTCCGAGATATGTTGGGAAAGGTCGTCAAGATTGGCCCCCAACCATGTTGAACGCCCATACGGCGTCA CCCCTGTGCAATCCCTAACCATTATCAATGCTAGTGGCGTGCGTGTTGAAGTGTCGTTATGGTCCGAACTGGCCTTTATCCTGGACGCAGATATGTTCCC CCTTGATGATGTTGCTGAGCCCGTCATCGTTGCTCTGTCGGCCTTCCGCATTGGCAGATTCCAAGGTTTGCTTCTGTGCACCCTTTGTTTCACCACATAC CCCGAACCTTGCTTTTTTCCTTATGTCGTCCTGGCCCATGTGCAGATGATATTACAGCCACTAGCGTGCAGGCGAGCCGCGTTGTTCTACAGCCTCGATA CCCAGCTGCTGACGAGCTATGCGCATAGTCCTGCTCTCAATGCTCTTGTGCCGTCTCCGCTCATGGTCAGGGCTACTGGTGCAGCAAACATGACTCGATC CATGCAACCGACACAACCTTCAAAGCTGGCACCGTACATTTGTGACATCACTGCACTGGCTGATGGCGTCAATACAGGTGGAATACTCTTGCGATTTCTG TGTTCATGGCGAGCAGCTTTTGGCACTCGGCCAGTTGCTCAATGCCCCCTTTTAACACAGTGGCTCGTCATCCATGAAAACTGTGTCGAGGGCTTCACCT CATGGGACTATGCAGCGGCGGTTTTGGCTAACCTGACCCAAGGGACCCTGTACGCTATCCCATTCCCATGTGTTATACTAGCCACTAGAGAGATGCGTTC CTGTCCGGGTGATTTCACTCTTGCTATCTACCCTGAACAGCTTATGTCCCCTGTGCATGAAGACCCAGACATGCCTTTTTTTCCATCAGAGATCTTTAAC ATCGTCCCAGCAAAGACCCTCTGCAACCAGAATGTTACACGCGCCTTCACTTCTGACATCATTGGTTGCGTCGTTTCCATAACCGATCCTGCGCATGTTA CTCGTGGCGCTTTGGCTTTCACAGTTGTTGTTGATGACCCAGGCGCGTTTCGGGTATCTGTCCGTTACAGCTCCTTTGTACCGCCTCCTGGATTCTCCAT CAACGATCTAGCTACTGCTGAACAAGTCCGCCCCGTCCTTTGCATTTTCACATGCCTCGCAGCCTGTGACCCTCCAGCTCCCACGGAAGTTCCCTCTGGC AGCTTTGCTCTTGCAGGAACCAGTCTTGCCTGCTCAAGCAAATGTAACCTTTTCTCAGGACTTGCAGACAATTGGTTTGTGCTTTACACCACCTTATGCC CCCATTTACACTTTCAGGAAACTATTTGGTGTATAATCCGTTTAGTTAAAGTTCATAACCAGGCTGCCAACGTTGAGTACGGTGATGGCACCCCAAGGTT TACTCCACAAACTCCTCGATGTTCTGATGCTACGGCTTGCACGAACTTCCTCTTTCCAAGCCCGGCCGCTGATCTTCTCTTTAAAATGCATGCATCTGAG TACGTTGCGTTGGACTCAACCAGTCAGCATGACCTACTAGCGAGTCTCCAGGATCGTACTTTCATTATCGAAACGCGCTCGGTGGGCCCCGAACCTAGCA GCCGTGCAAAGTTTGTTGTGGAAAACTTGTGGGACCCGATCGCTGGATTCTTTTAA
AA sequence Show only first row Show all	>Lus10039353 pacid=23175555 polypeptide=Lus10039353 locus=Lus10039353.g ID=Lus10039353.BGIv1.0 annot-version=v1.0 MSDTVKGCLLECRAAAHLHNSSPFSTALPSSPCLHSLSLNTNPSSSIISTHFLRTLPAAPGFYQQPTSMMLRDLSPENMPPHLHMRLLHLWKLGKPGEPG NFDALGTLWTDSEICWERSSRLAPNHVERPYGVTPVQSLTIINASGVRVEVSLWSELAFILDADMFPLDDVAEPVIVALSAFRIGRFQGLLLCTLCFTTY PEPCFFPYVVLAHVQMILQPLACRRAALFYSLDTQLLTSYAHSPALNALVPSPLMVRATGAANMTRSMQPTQPSKLAPYICDITALADGVNTGGILLRFL CSWRAAFGTRPVAQCPLLTQWLVIHENCVEGFTSWDYAAAVLANLTQGTLYAIPFPCVILATREMRSCPGDFTLAIYPEQLMSPVHEDPDMPFFPSEIFN IVPAKTLCNQNVTRAFTSDIIGCVVSITDPAHVTRGALAFTVVVDDPGAFRVSVRYSSFVPPPGFSINDLATAEQVRPVLCIFTCLAACDPPAPTEVPSG SFALAGTSLACSSKCNLFSGLADNWFVLYTTLCPHLHFQETIWCIIRLVKVHNQAANVEYGDGTPRFTPQTPRCSDATACTNFLFPSPAADLLFKMHASE YVALDSTSQHDLLASLQDRTFIIETRSVGPEPSSRAKFVVENLWDPIAGFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039353 [exp]	0	1

Compare expression of checked genes

Lus10039353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.