Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22690 627 / 0 unknown protein AT2G29760 285 / 1e-84 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 283 / 1e-84 SLO1 SLOW GROWTH 1 (.1) AT1G11290 275 / 1e-80 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G01580 271 / 3e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 275 / 4e-80 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27110 268 / 7e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15930 266 / 6e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03380 261 / 2e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G04370 256 / 2e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006600 [exp] 650 / 0 AT3G22690 384 / 3e-127 unknown protein Lus10018223 [exp] 291 / 5e-87 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 287 / 2e-85 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 277 / 5e-81 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031028 [exp] 270 / 6e-80 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 268 / 6e-78 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000706 [exp] 263 / 7e-76 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10004052 [exp] 258 / 9e-76 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10002288 [exp] 258 / 1e-75 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083700 [exp] 783 / 0 AT3G22690 1050 / 0.0 unknown protein Potri.006G245300 [exp] 387 / 1e-121 AT3G22690 570 / 0.0 unknown protein Potri.001G019500 [exp] 316 / 6e-97 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.003G031600 [exp] 312 / 1e-94 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 295 / 2e-88 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G124400 [exp] 290 / 4e-87 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 290 / 5e-86 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G161800 [exp] 283 / 8e-84 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G018800 [exp] 284 / 2e-83 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 282 / 4e-83 AT3G22690 582 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039355 pacid=23175453 polypeptide=Lus10039355 locus=Lus10039355.g ID=Lus10039355.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCAATTGCTCTATCTCCAATCCCCGTCTCGTCGCCTTCCAAAACTATCACCATCCAGAATGAACCTGCACCAGCGACGATAGCAGCTTATA CTTCTCGCCGGACCCAGCCCTTCAAGAACTGCAAGTCCATGGTTGAGCTAAAGCAGCTGCAGTCGCATATAACCAAAACGGGTCGTGATCAGGATCCATC CTCAATTTTGAGCATCGTCTCTTCTTGCGTTGAGATTGGCTCGTATGAGAGTTTAGATTATGCGCATAAAGCCCTGGAGATTTTCGTTGAAGATAACGGA ACGACTGGGAGTCTGTCTATGTTCAATTCTCTGATAAGACGCTGTTCTTCTCGTGGGTTTGGGGGTAAAGCCATTTTGGTTTTCAAGGCAATGGTGTGCT TTGGCGTTTCTCCGGATAACTTCACATTTCCATTTTTGCTGAGTGGATGCTCAAAGACTCGAGCATTCAGTGAGGGAATTCAGGCTCATGGAGCACTTGT CAAGATGGGTTTATCCACCGATGGGTATATTCAGAATTCATTGATACACTTCTATGGTGAATGCGAAGAGATTGAGTTCATGCGGAAGGTGTTCGATGAA ATGACCGAGAGAAACATCGTGACCTGGACCAGCTTAATTGGTTGTTATGTTAAGAGGGATTTGCCTGGAGTGGCGGTCGATTTGTTTCTTGAGATGGTAG AAATGGGTATCAGGCCGAACCCCATTACTCTGGTTTGTGCTATATCTGCTTGCGCCAAGTTGCAGGATCTTGAGTTAGGCAAGAAGATACGTGGTTACAT TGTGGAGTTCGGGTTGAAGGTCAATACAGTGATGACTAATGCACTTGTTGATATGTATATGAAGTGCGGAGATGTAGATTCGGCTAGGGAGATTTTTTAT GAATGTACTGGTAAAAATCTGGTCTTGTGCAACACCATGATGTCAAATTATGTCCGCCATGGAATGCCAAGTGAAGGTTTCGCCGTGTTAGATCAGATGA TGCAAGATGGCCCTCGACCGGACAGCGTTACAATGTTATCAGCAGTTTCAGCTTGTTCACAAATAGAAGATCTTCGGCGGGGAAGATGTTGTCATGGTTT TATATTGAGGAATGCCTTCCACCAGTGGGATAATGTATGTAATGCTCTGATAGACATGTACATGAAGTGTGGTAAACCTGAAGCAGCTTGTGCACTCTTT CATCACATGCCCAACAAGTCCTCTGTGTCATGGAACTCACTCATCTCTGGTTTTGTAAGATGTGGAGATGTAGAATCAGCTTGGCAGCTATTCCAGGAGA TGCCAGAGAGTGATATTGTGTCTTGGAATACTATGGTTGGAGCTTTGGTCCAAGAGAGCATGTTTGTGGAAGCAATTCAGCTATTCCGGGAAATGCAGAA CCAAGGTGTGGACGTGGATAGAGTGACACTCATGGAAGTTGCTTCTGCATGTGGGTATCTTGGAGCTCTGGAACTTGCGAAATGGATCTACGTGTACATT CAGAAGAACAATATTCAGTGCGATACCCGGCTTGGCACAACCTTGATTGATATGTTTGCTAGGTGTGGTGATCCTCATAGTGCAATGCAGGTCTTCAGTA AGATGGCAAAAAAAGATGTGTCAGCTTGGACAGCAGCCATCAGAGCCATGGCCATGGAAGGGAATGGCGAACAAGCTATTGAGCTTTTCAATGAGATGAT ACGTGAAGGAATTAAACCTGACGAGGTCGTGTTCGTCAATTTACTGTCGGGACTGAGTCACAAACGGTCAGTGGAAGAAGGCTGGCAGACTTTCAGGTAN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTCTTCAGACAAGGAAGTTGCTCTTGTGGAGATTATT GGTAGGCTCCATTAA
AA sequence Show only first row Show all	>Lus10039355 pacid=23175453 polypeptide=Lus10039355 locus=Lus10039355.g ID=Lus10039355.BGIv1.0 annot-version=v1.0 MAAAIALSPIPVSSPSKTITIQNEPAPATIAAYTSRRTQPFKNCKSMVELKQLQSHITKTGRDQDPSSILSIVSSCVEIGSYESLDYAHKALEIFVEDNG TTGSLSMFNSLIRRCSSRGFGGKAILVFKAMVCFGVSPDNFTFPFLLSGCSKTRAFSEGIQAHGALVKMGLSTDGYIQNSLIHFYGECEEIEFMRKVFDE MTERNIVTWTSLIGCYVKRDLPGVAVDLFLEMVEMGIRPNPITLVCAISACAKLQDLELGKKIRGYIVEFGLKVNTVMTNALVDMYMKCGDVDSAREIFY ECTGKNLVLCNTMMSNYVRHGMPSEGFAVLDQMMQDGPRPDSVTMLSAVSACSQIEDLRRGRCCHGFILRNAFHQWDNVCNALIDMYMKCGKPEAACALF HHMPNKSSVSWNSLISGFVRCGDVESAWQLFQEMPESDIVSWNTMVGALVQESMFVEAIQLFREMQNQGVDVDRVTLMEVASACGYLGALELAKWIYVYI QKNNIQCDTRLGTTLIDMFARCGDPHSAMQVFSKMAKKDVSAWTAAIRAMAMEGNGEQAIELFNEMIREGIKPDEVVFVNLLSGLSHKRSVEEGWQTFRX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISSDKEVALVEII GRLH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22690			unknown protein		Lus10039355 [exp]	0	1
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003675 [exp]	4.6	0.9107
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010771 [exp]	5.0	0.9090
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003101 [exp]	5.3	0.9239
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	5.8	0.9197
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10003599 [exp]	7.3	0.9074
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10008829 [exp]	8.4	0.9059
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039149 [exp]	9.8	0.8961
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030259 [exp]	16.9	0.8906
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043198 [exp]	18.7	0.8824
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009012 [exp]	22.4	0.8903

Compare expression of checked genes

Lus10039355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.