Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22740 478 / 8e-171 HMT3 homocysteine S-methyltransferase 3 (.1) AT3G63250 447 / 2e-158 HMT-2, ATHMT-2 ,HMT2 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) AT3G25900 353 / 1e-121 HMT-1, ATHMT-1 Homocysteine S-methyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006602 [exp] 593 / 0 AT3G22740 455 / 7e-162 homocysteine S-methyltransferase 3 (.1) Lus10014686 [exp] 455 / 1e-161 AT3G63250 507 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Lus10006901 [exp] 381 / 3e-133 AT3G63250 429 / 8e-153 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Lus10041451 [exp] 346 / 2e-118 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3) Lus10034320 [exp] 344 / 4e-118 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083600 [exp] 530 / 0 AT3G22740 512 / 0.0 homocysteine S-methyltransferase 3 (.1) Potri.008G155900 [exp] 504 / 0 AT3G22740 485 / 2e-173 homocysteine S-methyltransferase 3 (.1) Potri.005G213100 [exp] 473 / 1e-168 AT3G63250 532 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.002G049800 [exp] 468 / 8e-167 AT3G63250 512 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.010G125200 [exp] 343 / 6e-118 AT3G25900 529 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02574 [flax] [poplar] S-methyl_trans Homocysteine S-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10039356 pacid=23175553 polypeptide=Lus10039356 locus=Lus10039356.g ID=Lus10039356.BGIv1.0 annot-version=v1.0 ATGGGTCAGGTAAATGGAGAAACACCGTCAACGCTCCTAAGCGATTTCCTCCACCAGTGCGGTGGCAGCGCCGTCGTCGACGGAGGTTTCGCCACTGAAC TCGAACGTTACGGCGCCGACCTCAACGACCCGCTCTGGAGTGCTAAGTGTCTCATAAGCTCTCCTCAGCTTGTCAGAAGGGTGCACTTGGATTATCTTGA TGCTGGTGCTAATATAATCCTGACAGCATCTTATCAGGCTACTATCCAAGGCTTTGAATCGAAAGGACTTCCCAAGGAGGAAGCTGAGCACCTGCTGACA AGAAGTGTGGAAATTGCTTGCGAGGCTAGGGAGATTTATGCTGACAAAGCTAGTCAGAGCTCTTGGGATTTAGTAGCGAATGGGCAAATCTCCAGGCGGC CTGTTCTTATTGCTGCTTCCATTGGTAGCTATGGTGCTTATTTGGCTGATGGCTCTGAGTATAGTGGGGCCTACGGGGAAGCAGTGACCCTGCAGGTCTT GAAGGAGTTTCACAGGAGGAGGCTGCAAATCCTGGCAAGTTCTGGTGCAGACTTGATTGCTCTGGAGACAATCCCTAACAAGCTAGAGGCACAGGCGTAT GCTGAGCTTCTTGAAGAGGAAGGCATCACAACACCAGCATGGTTTTCTTTCTCTTCCAAGGATGGAGTCAATGTGGTCAGTGGAGATTCCATGGCGGAGT GTGCTGCTATTGCAGACTCGTGCAAGCAAGTTGTTTCTGTTGGAATCAACTGCACTCCGCCCAGATTTATCCATGACCTCATCCTCTCTATCCGCAAGGT AACGAGCAAGCCAATAATTGTATACCCGAACAGCGGGGAGACTTATGATCCTGAACTCAAACAATGGGTGAAATCAACTGGGGTTTCGAATGAAGACTTC GTGTCATACGTAGGAAAGTGGCGTGAAGCTGGAGCTTCTCTATTCGGTGGCTGCTGCAGAACAACTCCTAGTACCATCAGAGGAATCTGCCGGGTTCTTT CGGAACCGTCAAAGTGA
AA sequence Show only first row Show all	>Lus10039356 pacid=23175553 polypeptide=Lus10039356 locus=Lus10039356.g ID=Lus10039356.BGIv1.0 annot-version=v1.0 MGQVNGETPSTLLSDFLHQCGGSAVVDGGFATELERYGADLNDPLWSAKCLISSPQLVRRVHLDYLDAGANIILTASYQATIQGFESKGLPKEEAEHLLT RSVEIACEAREIYADKASQSSWDLVANGQISRRPVLIAASIGSYGAYLADGSEYSGAYGEAVTLQVLKEFHRRRLQILASSGADLIALETIPNKLEAQAY AELLEEEGITTPAWFSFSSKDGVNVVSGDSMAECAAIADSCKQVVSVGINCTPPRFIHDLILSIRKVTSKPIIVYPNSGETYDPELKQWVKSTGVSNEDF VSYVGKWREAGASLFGGCCRTTPSTIRGICRVLSEPSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22740		HMT3	homocysteine S-methyltransfera...		Lus10039356 [exp]	0	1
AT3G22740		HMT3	homocysteine S-methyltransfera...		Lus10006602 [exp]	1.0	0.7280
AT4G12010			Disease resistance protein (TI...		Lus10018021 [exp]	15.1	0.7006
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10016102 [exp]	22.0	0.6553
AT2G33700			Protein phosphatase 2C family ...		Lus10030731 [exp]	53.0	0.6763
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10015988 [exp]	89.8	0.6457
AT5G56610			Phosphotyrosine protein phosph...		Lus10034998 [exp]	159.2	0.5834
AT3G23940			dehydratase family (.1.2)		Lus10032617 [exp]	167.5	0.5861
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10021458 [exp]	189.7	0.5956
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Lus10011750 [exp]	192.2	0.5946
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023450 [exp]	220.2	0.5704

Compare expression of checked genes

Lus10039356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.