Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22750 610 / 0 Protein kinase superfamily protein (.1) AT4G14780 579 / 0 Protein kinase superfamily protein (.1) AT3G01490 523 / 0 Protein kinase superfamily protein (.1) AT5G50000 519 / 0 Protein kinase superfamily protein (.1) AT3G63260 509 / 0 ATMRK1 Protein kinase superfamily protein (.1.2) AT4G31170 253 / 1e-80 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 245 / 1e-77 Protein kinase superfamily protein (.1) AT3G46930 223 / 3e-68 Protein kinase superfamily protein (.1) AT5G58950 221 / 8e-67 Protein kinase superfamily protein (.1) AT4G35780 217 / 3e-65 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006603 [exp] 767 / 0 AT3G22750 607 / 0.0 Protein kinase superfamily protein (.1) Lus10042622 [exp] 594 / 0 AT3G22750 605 / 0.0 Protein kinase superfamily protein (.1) Lus10022076 [exp] 528 / 0 AT3G22750 545 / 0.0 Protein kinase superfamily protein (.1) Lus10002368 [exp] 515 / 0 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10042129 [exp] 513 / 0 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1) Lus10022227 [exp] 499 / 7e-177 AT3G01490 665 / 0.0 Protein kinase superfamily protein (.1) Lus10030621 [exp] 276 / 2e-89 AT3G01490 284 / 2e-92 Protein kinase superfamily protein (.1) Lus10030868 [exp] 247 / 7e-79 AT3G01490 253 / 3e-81 Protein kinase superfamily protein (.1) Lus10020374 [exp] 242 / 3e-76 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G156000 [exp] 641 / 0 AT3G22750 608 / 0.0 Protein kinase superfamily protein (.1) Potri.010G083500 [exp] 628 / 0 AT3G22750 601 / 0.0 Protein kinase superfamily protein (.1) Potri.005G213200 [exp] 598 / 0 AT3G22750 575 / 0.0 Protein kinase superfamily protein (.1) Potri.002G049700 [exp] 595 / 0 AT3G22750 600 / 0.0 Protein kinase superfamily protein (.1) Potri.012G079000 [exp] 526 / 0 AT5G50000 661 / 0.0 Protein kinase superfamily protein (.1) Potri.017G072900 [exp] 521 / 0 AT3G01490 667 / 0.0 Protein kinase superfamily protein (.1) Potri.015G074400 [exp] 519 / 0 AT5G50000 654 / 0.0 Protein kinase superfamily protein (.1) Potri.001G351300 [exp] 517 / 0 AT3G01490 664 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 251 / 6e-80 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 251 / 1e-79 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10039357 pacid=23175620 polypeptide=Lus10039357 locus=Lus10039357.g ID=Lus10039357.BGIv1.0 annot-version=v1.0 ATGGATTCAAGGATGGACCAGGATGTGGGCAATTTGGATATAGAGAAGAAGAAGGAAGAGGGTGATCACGAGGGAGGTATGAATTCTAAGGTGAAGGGAA ATGGAAGTGTTAGTAGAAAAGATATGATTTTTCGAGCGGATCGAATCGATTTGAAGATCCTGGATGTACAGCTAGAGAAGCACCTGAGTAGGGTGTGGTC GAGGAACACCACAGACAACGCTAAGCCTAAAGAAGAGTGGGAGATTGATTTGTCTAAGTTGGACATCAAAACCCAGATAGCTCGTGGTACTTATGGCACT GTTTATAAAGGCACTTATGATAATCAAGATGTTGCAGTGAAAGTGTTGGATTGGGGGGAAGATGGTATGACTACAGTATCTGAAGCTGCTTCTCTTCGAG CATCATTTCGTCAAGAGGTTGCTGTTTGGCATAAGCTTGACCATCCTAATGTTACCAAATTCGTTGGAGCATCGATGGGAACTTCAAATCTCAAGGTTTC AAATAATAAATCTGATGGTCAGCATACTGCTAGAGCATGTTGTGTTGTGGTTGAGTATCAACCTGGTGGAACACTAAAGCAGTACTTGATAAGAAATAGG CGAAAGAAACTTCCTTATAAAGTTGTAATACAACTTGCTTTGGATCTCTCTAGGGGTTTGAGTTACCTACATTCGAAGAAAATTGTGCACCGTGATGTGA AGTCGGAAAACATGTTGCTTGATAATCATAGAAATCTTAGGATTGCGGATTTTGGTGTTGCTCGAGTCGAAGCTCAAAATCCAAGTGATATGACTGGTGA AACTGGTACCCTTGGATACATGGCACCTGAGGTCCTTGATGGCAAGCCATATAACAGAAGGTGTGATGTTTATAGCTTCGGCATATGTTTATGGGAAATC TATTGTTGTGATATGCCATATCCAGATCTTAGCTTTGCTGATGTGACGTCCGCGGTTGTTCGACAAAACTTGAGGCCGGAGATTCCGAGATGTTGTCCAA GTTCACTAGGAAGCATCATGAAGAAATGTTGGGATGCACAATCAGAGAACCGTCCAGAAATGGCTGAAGTGGTGAAGATGTTGGAAGCCATTGATACAAG TAAAGGAGGAGGAATGATCCCTGAAGACCAGAACCCTGGTTGTTTCTGCTTCGCCCCAACCCGTGGCCCTTAA
AA sequence Show only first row Show all	>Lus10039357 pacid=23175620 polypeptide=Lus10039357 locus=Lus10039357.g ID=Lus10039357.BGIv1.0 annot-version=v1.0 MDSRMDQDVGNLDIEKKKEEGDHEGGMNSKVKGNGSVSRKDMIFRADRIDLKILDVQLEKHLSRVWSRNTTDNAKPKEEWEIDLSKLDIKTQIARGTYGT VYKGTYDNQDVAVKVLDWGEDGMTTVSEAASLRASFRQEVAVWHKLDHPNVTKFVGASMGTSNLKVSNNKSDGQHTARACCVVVEYQPGGTLKQYLIRNR RKKLPYKVVIQLALDLSRGLSYLHSKKIVHRDVKSENMLLDNHRNLRIADFGVARVEAQNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEI YCCDMPYPDLSFADVTSAVVRQNLRPEIPRCCPSSLGSIMKKCWDAQSENRPEMAEVVKMLEAIDTSKGGGMIPEDQNPGCFCFAPTRGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22750			Protein kinase superfamily pro...		Lus10039357 [exp]	0	1
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10022233 [exp]	5.0	0.8396
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008836 [exp]	10.3	0.8127
AT1G55760			BTB/POZ domain-containing prot...		Lus10027101 [exp]	14.0	0.7946
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	17.4	0.8104
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022358 [exp]	19.1	0.7718
AT5G65500			U-box domain-containing protei...		Lus10035947 [exp]	19.6	0.7980
AT5G39785			Protein of unknown function (D...		Lus10007264 [exp]	23.9	0.7802
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10017824 [exp]	25.0	0.7790
AT3G20530			Protein kinase superfamily pro...		Lus10040050 [exp]	29.2	0.7341
					Lus10000510 [exp]	30.1	0.7968

Compare expression of checked genes

Lus10039357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.