Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14770 364 / 1e-111 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G22780 346 / 8e-105 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G22760 299 / 1e-88 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G04850 184 / 2e-48 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT2G20110 107 / 1e-23 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT4G29000 106 / 3e-23 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT5G25790 103 / 6e-23 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G16160 86 / 2e-17 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006604 [exp] 1269 / 0 AT4G14770 446 / 1e-147 TESMIN/TSO1-like CXC 2 (.1) Lus10020590 [exp] 288 / 7e-90 AT4G14770 102 / 3e-25 TESMIN/TSO1-like CXC 2 (.1) Lus10002033 [exp] 186 / 6e-48 AT3G22780 248 / 4e-71 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002895 [exp] 184 / 1e-47 AT3G22780 236 / 7e-68 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011693 [exp] 114 / 1e-25 AT4G29000 330 / 3e-105 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10009494 [exp] 113 / 3e-25 AT4G29000 335 / 2e-106 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10043225 [exp] 110 / 2e-24 AT4G29000 520 / 2e-179 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011103 [exp] 109 / 4e-24 AT4G29000 463 / 8e-157 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10023656 [exp] 103 / 3e-22 AT4G29000 491 / 2e-168 Tesmin/TSO1-like CXC domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G156100 [exp] 585 / 0 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.010G083400 [exp] 548 / 0 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.005G051100 [exp] 291 / 1e-83 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.018G030000 [exp] 191 / 1e-49 AT4G14770 207 / 1e-56 TESMIN/TSO1-like CXC 2 (.1) Potri.013G038301 [exp] 183 / 2e-49 AT3G22780 196 / 1e-55 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.006G251200 [exp] 168 / 3e-42 AT3G22780 188 / 6e-50 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.001G173600 [exp] 163 / 3e-41 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.001G184800 [exp] 107 / 6e-24 AT2G20110 286 / 3e-90 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.018G083000 [exp] 106 / 8e-24 AT4G29000 410 / 9e-139 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.006G160400 [exp] 107 / 2e-23 AT4G29000 518 / 2e-178 Tesmin/TSO1-like CXC domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03638 [flax] [poplar] TCR Tesmin/TSO1-like CXC domain, cysteine-rich domain
Representative CDS sequence Show only first row Show all	>Lus10039358 pacid=23175694 polypeptide=Lus10039358 locus=Lus10039358.g ID=Lus10039358.BGIv1.0 annot-version=v1.0 ATGGACACTCCCCAGAAGCCCAAGGCCACTCCTCCTGCTCTCTCTAAGTTCGAGGAATCCCCAGTGTTTAGCTACATCAACAGTCTCTCTCCAATCAAGC CAGTCAAGTCACTCAACATAACTCAAACATTTCATTCACTAAGTTTTTCAACCTTGCCTTCCATCTTCTCCTCCCCCCATATCAGTTCCCATCACAAGGA GACCAGGTTCTTCAAAAGGCACAGCAACTGCCCAGATCCATCAAGACCTGAACATTCTTCTGAGAAGAAACAGGATGGTGGCGAAGAGATTGAGCCCCAG GAAAATTTCAACCAAGTGGTGTTTATTGGAGATGCCTCAGTTGATCTTCCCAAGTCATCCAAGTATGACTGTGGTAGCCCTGCAGCCCAACAGAACCCTC AACAACATGGTGCTTCGACAGATTGCATGTCTGAAGCTGTTGCGGCATCAGAACCAGTTGATCAATTTACAGGAGAAGCCTCTCATAAGTGTCAGCCTCA AGGTCTAGGGAACTACCATACTCAACAAACTAAAGATGGTGCAGAATGTAGTTGGGACAGTTTGATAGATGCTGCTGATCTATTGCTATTCAACTCCCCT ACTATCACCGAGGCTTTTAAAGCTGCGCATAAACATACAATGGACCGTGCATCAGGGATTTCTACTTCCTTGATTGAGGCAAACGATCCAACTGATTCAC TTTACCAGACAGAAATTGAAGGGCCTTCTACTCAACCCGGCGATACTCTTCTGCCCAAGGAAGCAGATAGTGATAGCTGCATGCCTAGCAATAGTGAGAA AGTACATAATGAGGCTGCTTCTAATTTGTATCGAGGCTTGCGAAGGCGTTGTCTTGATTTTGAAATGGTGGGAATGCATAGAAAGAACTTCACCTATGAA CAGATGCAAGCCAAAGAGAACAATGCTTATGAAGATGAGCAACTGGTTCCTTTCAATTCTAGCAGTGATTCCTCAAGGTGCATTGTACCTGGAATGGGGT TGCACTTAAACTCTCTCGCAAGAAGTTTGAATACCAGAGGCAGTACGAATGAGACTTTGTCTTCTGGAATAAGTCTTGACCCTTTCAACTCTCCAATAAT TGGACAAGAACTCCTTGAATCATTGAATATAGGGACCTCTGACGGGAACTTGGATCCCTCCGAAAACAATGTCAAACTTGCAGAGGATATCTCACCAGCA TCTGCTTATTTGGTTAACGAAGAGTTTGGCTTGGGTAGCCCCAAAAAGAAAAGGCTGAAGTTGGAAGGAGAAGCCGAGTCCTGCAAGCGTTGTAACTGCA AGAAATCAAAGTGTTTGAAACTCTACTGTGAATGTTTTGCTGCTGGGGTATACTGCATCGAACCATGTTCTTGTCAAGATTGCTTCAATAAGCCCATTCA CGAGGATACAGTGCTATCAACTCCGGAACAACCACTGTTGCAACTCTTTGCCATGGACACTCCCCAGAAGCCCAAGGCTACTCCTCCTGCTCTCTCTAAG TTCGAGGAATTTCAAGGTTTGCTGCGGGGCTTACCAATTCAGTGCTTTCAGTTTCATTCCCCACACCCCCCGGAGACCAGGTTCTTCAAAAGGCACAGCA ACTGCCCAGATCCATCAAGACCTGAACATTCTTCTGAGAAGAAACAGGATGGTGGCAAAGAGATTGCTGTAGAGCCCCAAGAAAATTTCAACCAAGTGGT GTTTATTGGAGATGCCTCGGTTGATCTTCCTAAGTCATCCAAGTATGACTGTGGTAGCCCTGAAGCCCAGCAGAACCCTCAACAACACGGTGCTTCGACA GATTGCATGTCTGAAGCTGTTGCGGCATCAGAACCAGTTGATCAATTTACAGGAGAAGCCTCTCATAAGTGTCAGCCTCAAGGTCTAGGGAACTACCATA CTCAACAAACTAAAGATGGTGCAGAATGTAGTTGGGACAGTTTGATAGATGCTGCTGATCTATTGCTATTCAACTCCCCTACTATCACCGAAGCTTTTAA AGCTGCGCATAAACATACAATCGACCGTGCTTCAGGGATTGCTACTTCCTTGATTGAGGCAAACGATCCAACTGATTCACTTAACCAGACAGAAATGGGA GGGCCTTCTACTCAACCCAGTGATACTCTTCTGCCCAAGGAAGCAGATAGTGATAGCTGCATGCCTAGCAATAGTGACAAAGTACATAATGAGGCTGCTT CTAATTTGTATCGAGGCTTGCGAAGGCGTTGTCTTGATTTTGAAATGGTGGGAATGCATAGAAAGAACTTCACCTATGAACAGATGCAAGCCAAAGAGAA CAATGCTTATGAAGATGAGCAACTGGTTCCTTTCAATTCTAGCAGTGATTCCTCAAGGTGCATTGTACCTGGAATGGGGTTGCACTTAAACTCTCTCGCA AGAAGTTTGAATACCAGAGGCAGTACGAATGAGACTTTGTCTTCTGGAATAAGTCTTGACCCTTTCAACTCTCCAATAATTGGACAAGAACTCCTTGAAT CATTGAATATAGGGACCTCTGACGGGAACTTGGATCCCTCCGAAAACAATGTCAAACTTGCAGAGGATATCTCACCAGCATCTGCTTATTTGGTTAACGA AGAGTTTGGCTTGGGTAGCCCCAAAAAGAAAAGCTACTGTGAATGTTTTGCTGCTGGGGTATACTGCATCGAACCATGTTCTTGTCAAGATTGCTTCAAT AAGCCCATTCACGAGGATACAGTGCTATCAACTCGTAAGCAGATTGAGTCTCGCAATCCACTTGCATTTGCTCCCAAAGTGATTAGGACATCTGAGCCTG GAGGGGCTGAAACTGGAGACGAACCGATGAAAACGCCGGCATCTGCACGACATAAAAGAGGATGCAATTGCAAGAAATCGAGTTGTCTGAAGAAATACTG CGAATGCTACCAGGGTGGAGTCGGATGCTCGATTAACTGCCGGTGTGAAGGGTGCAAGAATGCATTTGGCAGAAAAGATGGGTCTACTTTACCAGAAACA GAAGCTGAACAAGAGGAGGATACAGAAGCAAATGAGAAGAACCGATTAGAAACATCCGTACAGCAAATTGATATCCATAACAGTGAAGAGGAGCAAAACC ATAACCACGGTCTCCCTGCAACACCATTACAGATTTCCAGACCATTGGTTCAGCTACCATTCTCTTCTTCATCAGCCATAAAACCACCAAGGTCTCTTCT AGGAATTTCGTCGACTGGATTATTCCCGGGACACAAATATGGGAAACCAAGCATCATAAGAGCTCAATCCAAGCTTGAGAAAAGACCATTCCAGAGCAGT GGTGAGGAAGATATGCCTGAAATCCTACGAGGAGGAGGAAGCTTCTCGCGGGGGATGGGAATTAAGGTTTCGTCTCCGAACAGCAAGAGGGTATCTCCCC CTCACCAAAACAACAACAAGAATAATAAGATGGGATCATCAACGACATCTCCGGGACGTAAAAGTGGGAGGAAGCTGATATTGCACTCAATACCTTCTTT TCCTTCTCTAACTCCCCCGCCACTGAAATGA
AA sequence Show only first row Show all	>Lus10039358 pacid=23175694 polypeptide=Lus10039358 locus=Lus10039358.g ID=Lus10039358.BGIv1.0 annot-version=v1.0 MDTPQKPKATPPALSKFEESPVFSYINSLSPIKPVKSLNITQTFHSLSFSTLPSIFSSPHISSHHKETRFFKRHSNCPDPSRPEHSSEKKQDGGEEIEPQ ENFNQVVFIGDASVDLPKSSKYDCGSPAAQQNPQQHGASTDCMSEAVAASEPVDQFTGEASHKCQPQGLGNYHTQQTKDGAECSWDSLIDAADLLLFNSP TITEAFKAAHKHTMDRASGISTSLIEANDPTDSLYQTEIEGPSTQPGDTLLPKEADSDSCMPSNSEKVHNEAASNLYRGLRRRCLDFEMVGMHRKNFTYE QMQAKENNAYEDEQLVPFNSSSDSSRCIVPGMGLHLNSLARSLNTRGSTNETLSSGISLDPFNSPIIGQELLESLNIGTSDGNLDPSENNVKLAEDISPA SAYLVNEEFGLGSPKKKRLKLEGEAESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLSTPEQPLLQLFAMDTPQKPKATPPALSK FEEFQGLLRGLPIQCFQFHSPHPPETRFFKRHSNCPDPSRPEHSSEKKQDGGKEIAVEPQENFNQVVFIGDASVDLPKSSKYDCGSPEAQQNPQQHGAST DCMSEAVAASEPVDQFTGEASHKCQPQGLGNYHTQQTKDGAECSWDSLIDAADLLLFNSPTITEAFKAAHKHTIDRASGIATSLIEANDPTDSLNQTEMG GPSTQPSDTLLPKEADSDSCMPSNSDKVHNEAASNLYRGLRRRCLDFEMVGMHRKNFTYEQMQAKENNAYEDEQLVPFNSSSDSSRCIVPGMGLHLNSLA RSLNTRGSTNETLSSGISLDPFNSPIIGQELLESLNIGTSDGNLDPSENNVKLAEDISPASAYLVNEEFGLGSPKKKSYCECFAAGVYCIEPCSCQDCFN KPIHEDTVLSTRKQIESRNPLAFAPKVIRTSEPGGAETGDEPMKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNAFGRKDGSTLPET EAEQEEDTEANEKNRLETSVQQIDIHNSEEEQNHNHGLPATPLQISRPLVQLPFSSSSAIKPPRSLLGISSTGLFPGHKYGKPSIIRAQSKLEKRPFQSS GEEDMPEILRGGGSFSRGMGIKVSSPNSKRVSPPHQNNNKNNKMGSSTTSPGRKSGRKLILHSIPSFPSLTPPPLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22760	CPP	SOL1	Tesmin/TSO1-like CXC domain-co...		Lus10039358 [exp]	0	1
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10041515 [exp]	3.5	0.9555
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10006033 [exp]	4.6	0.9562
AT5G25590			Protein of unknown function (D...		Lus10022116 [exp]	8.0	0.9467
AT5G26850			Uncharacterized protein (.1.2....		Lus10029842 [exp]	8.8	0.9410
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	9.4	0.9511
AT3G51290			Protein of unknown function (D...		Lus10041885 [exp]	9.5	0.9459
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	12.1	0.9530
AT2G07170			ARM repeat superfamily protein...		Lus10027590 [exp]	14.3	0.9498
AT1G63640			P-loop nucleoside triphosphate...		Lus10002007 [exp]	14.8	0.9364
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041886 [exp]	17.1	0.9489

Compare expression of checked genes

Lus10039358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.