Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04840 409 / 4e-146 Ribosomal protein S3Ae (.1) AT4G34670 408 / 1e-145 Ribosomal protein S3Ae (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006609 [exp] 466 / 2e-168 AT4G34670 441 / 1e-158 Ribosomal protein S3Ae (.1) Lus10021907 [exp] 390 / 2e-138 AT4G34670 390 / 7e-139 Ribosomal protein S3Ae (.1) Lus10041191 [exp] 390 / 2e-138 AT4G34670 392 / 2e-139 Ribosomal protein S3Ae (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G156300 [exp] 421 / 1e-150 AT3G04840 414 / 7e-148 Ribosomal protein S3Ae (.1) Potri.010G083200 [exp] 419 / 5e-150 AT3G04840 407 / 2e-145 Ribosomal protein S3Ae (.1) Potri.005G051200 [exp] 412 / 2e-147 AT4G34670 418 / 1e-149 Ribosomal protein S3Ae (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01015 [flax] [poplar] Ribosomal_S3Ae Ribosomal S3Ae family
Representative CDS sequence Show only first row Show all	>Lus10039360 pacid=23175587 polypeptide=Lus10039360 locus=Lus10039360.g ID=Lus10039360.BGIv1.0 annot-version=v1.0 ATGGCTGTCGGGAAGAACAAGAGGATTTCCAAGGGTAAAAAGGGAGGCAAGAAGAAGGCTGCTGATCCGTTTACAAAGAAGGACTGGTATCACATCAAGG CTCCCTTGATGTTCACCCACAAGAATGTCGGCATGACCCTCGTCTCCCGTACACAGGGTACTAAGATTGCTTCAGAAGGACTCAAGCACAGAGTCTTTGA GGTTTCCCTCGGTGAACTTCAAGGTGATGAAGATCAGGCCTACAGGAAGATCAGGCTGAGGGCTGAGGATGTGCAAGGCAAGAACGTGTTGACTAATTTC TGGGGAATGGATTTCACCACCGACAAGTTGAGGTCTTTGGTGAGGAAGTGGCAAACTTTGATTGAAGCTCATGTTGATGTGAAAACCACTGACAACTACA CTCTGCGCATGTTCTGTATTGCCTTCACCAAGAGGAGGCCCAACCAGGTCAAGAGGACCTGCTATGCCCAGACCAGCCAAGTCAGACAGATCCGCAGGAA GATGAGGGAAATTATGATTTCCCAGGCAGCAACTTGTGATCTGAAGGAGCTGGTGCATAAGTTCATCCCTGAAGCTATCGGCAAAGAGATTGAGAAACAG ACCTCAGGCATCTACCCACTCCAGAATGTCTTCATCCGTAAAGTCAAGATCTTGAAGGCTCCCAAGTTTGACATTGGAAAATTGATGGAGGTTCATGGTG ATTACTCGGATGATGTTGGTGTGAAGGTTGAGAGACCTGCTGATGAAACAATGGCTGATGCCCCAGCAGCTGCTGAAGAGGTTGCTGCTTGA
AA sequence Show only first row Show all	>Lus10039360 pacid=23175587 polypeptide=Lus10039360 locus=Lus10039360.g ID=Lus10039360.BGIv1.0 annot-version=v1.0 MAVGKNKRISKGKKGGKKKAADPFTKKDWYHIKAPLMFTHKNVGMTLVSRTQGTKIASEGLKHRVFEVSLGELQGDEDQAYRKIRLRAEDVQGKNVLTNF WGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIAFTKRRPNQVKRTCYAQTSQVRQIRRKMREIMISQAATCDLKELVHKFIPEAIGKEIEKQ TSGIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSDDVGVKVERPADETMADAPAAAEEVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10039360 [exp]	0	1
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10020612 [exp]	1.4	0.9430
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10013381 [exp]	2.0	0.9327
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10006609 [exp]	2.0	0.9410
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10043388 [exp]	3.0	0.9376
AT5G27120			NOP56-like pre RNA processing ...		Lus10001716 [exp]	3.2	0.9293
AT5G56940			Ribosomal protein S16 family p...		Lus10025984 [exp]	3.6	0.8905
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10009578 [exp]	3.7	0.9201
AT4G15640			unknown protein		Lus10012810 [exp]	4.1	0.8759
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10041029 [exp]	4.2	0.9251
AT2G27710			60S acidic ribosomal protein f...		Lus10043377 [exp]	4.9	0.8967

Compare expression of checked genes

Lus10039360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.