Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22800 401 / 7e-138 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 389 / 9e-133 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 385 / 4e-128 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G18670 386 / 4e-127 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 377 / 6e-124 LRX2 leucine-rich repeat/extensin 2 (.1) AT1G12040 367 / 4e-121 LRX1 leucine-rich repeat/extensin 1 (.1) AT5G25550 339 / 6e-114 Leucine-rich repeat (LRR) family protein (.1) AT4G28380 337 / 1e-113 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 341 / 4e-111 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 338 / 2e-110 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039363 [exp] 388 / 7e-131 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 379 / 5e-130 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 373 / 1e-127 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 382 / 3e-127 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 354 / 1e-119 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 353 / 1e-119 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 353 / 6e-118 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10021001 [exp] 319 / 2e-103 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 311 / 3e-100 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083100 [exp] 451 / 6e-159 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 409 / 8e-142 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 386 / 1e-130 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 389 / 3e-130 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 390 / 7e-129 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G151000 [exp] 378 / 9e-128 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G245600 [exp] 377 / 2e-127 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.007G139200 [exp] 359 / 3e-122 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.018G035100 [exp] 354 / 2e-117 AT3G24480 483 / 4e-166 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 344 / 5e-114 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10039362 pacid=23175703 polypeptide=Lus10039362 locus=Lus10039362.g ID=Lus10039362.BGIv1.0 annot-version=v1.0 ATGACGACAAAGAAGAAGAACTCACAGTCACATCCCAATCTCACTCCCAGAAATCTCGCGTCGCTTTTGATAATCACTCACATTCTGATGATGATGCTGC TATCAAAATCCCAATCTCAACAAGTAATCTACCCACCAATCTACATCCAGAACCCTCGCCTCATGGATGCCTACATCGCCCTCCAATCATGGAAGCTCGT CATCGTCTCCGACCCACTGGGCTTCACCACCAACTGGGCCGGCCCAGACGTCTGCAATTACACCGGCGTCTACTGTGCTCCTGCTCCCGACCAGCCCTCC CTTGCCACCGTCGCCGGCATCGACCTCAACCACGCCAACATCGCCGGTATCCTCCCCGAGCAGCTTGGCCTCCTCCGCGACCTCGCCCTCTTCCACATCA ACTCCAACCGCTTCTGCAGCAAGCTCCCTGCCTCCTTCGTCCACCTCAAGCTCCTCTACGAGCTTGACGTCAGCAACAACCTATTCAGCGGGCCATTCCC CTGGGTCATCTTCTACCTCCCCTCGCTTAAATACCTAGACATCCGATTCAACGAGTTCTTCGGCGAGATCCCTCCCGAGGTCTTCGAATTGGAGCTCGAC GCCCTCTTCCTCAACGACAACAAGTTCAAATCGTTACTCCCGGCCAACCTCGGCCACTCTCCCGTGTCGGTGCTCGTCCTGGCCAACAACCTCGTCGCCG GCTGCATCCCGCTGAGTATCGCCGGGATGGCGGAGACGCTGGATGAGATTATACTATCCAATTTGGGGCTTTCGGGTTGCTTGAGGCCAGAGATTGGGGA ACTGAAGGAGCTCAAGGTACTTGATCTGAGCTGTAATAAATTGAATGGGCCGTTGCCTGAATCTATTGCCGGGATGAAGAATTTGGAGCAGCTGGACGTC GGGCATAACAAGTTGTCGGGTCGGATCCCTAAGGGGATTTGCTTGCTTCCGAAATTGGAAAATTTCATGTACAAGAATAATTACTTCACCGGGGAGCCGC CGGAGTGTTTGAGGCTTGGAGCAGGGAACAATGATCGGAAGAATTGTATTCCGGGAAGGCCGGGGCAGCGGTCGGCGGCGGAGTGCGCCTTATTTAATGC AAATCCGTTTGATTGCGCTGGCAGTATTTGCCCGCTTCAGTAA
AA sequence Show only first row Show all	>Lus10039362 pacid=23175703 polypeptide=Lus10039362 locus=Lus10039362.g ID=Lus10039362.BGIv1.0 annot-version=v1.0 MTTKKKNSQSHPNLTPRNLASLLIITHILMMMLLSKSQSQQVIYPPIYIQNPRLMDAYIALQSWKLVIVSDPLGFTTNWAGPDVCNYTGVYCAPAPDQPS LATVAGIDLNHANIAGILPEQLGLLRDLALFHINSNRFCSKLPASFVHLKLLYELDVSNNLFSGPFPWVIFYLPSLKYLDIRFNEFFGEIPPEVFELELD ALFLNDNKFKSLLPANLGHSPVSVLVLANNLVAGCIPLSIAGMAETLDEIILSNLGLSGCLRPEIGELKELKVLDLSCNKLNGPLPESIAGMKNLEQLDV GHNKLSGRIPKGICLLPKLENFMYKNNYFTGEPPECLRLGAGNNDRKNCIPGRPGQRSAAECALFNANPFDCAGSICPLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039362 [exp]	0	1
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10012685 [exp]	1.0	0.9695
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10024105 [exp]	3.0	0.9379
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031689 [exp]	3.5	0.9608
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031108 [exp]	3.5	0.9661
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003106 [exp]	4.5	0.9370
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10018518 [exp]	6.0	0.9593
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	7.1	0.9541
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10040150 [exp]	7.5	0.9455
AT3G06460			GNS1/SUR4 membrane protein fam...		Lus10020825 [exp]	8.0	0.9331
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	8.1	0.9487

Compare expression of checked genes

Lus10039362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.