Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22800 431 / 3e-146 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 425 / 4e-140 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT3G24480 409 / 3e-137 Leucine-rich repeat (LRR) family protein (.1) AT4G18670 412 / 3e-134 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 373 / 2e-119 LRX2 leucine-rich repeat/extensin 2 (.1) AT1G12040 363 / 3e-116 LRX1 leucine-rich repeat/extensin 1 (.1) AT5G25550 347 / 4e-114 Leucine-rich repeat (LRR) family protein (.1) AT4G28380 345 / 4e-114 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 337 / 1e-106 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 327 / 6e-103 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006611 [exp] 642 / 0 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 468 / 2e-161 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 402 / 4e-136 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 410 / 8e-135 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 367 / 6e-122 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 359 / 3e-118 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 362 / 6e-118 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10012047 [exp] 315 / 2e-98 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 310 / 2e-96 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083000 [exp] 436 / 8e-149 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 421 / 4e-144 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 405 / 1e-134 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 407 / 3e-134 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 384 / 1e-126 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.007G139200 [exp] 371 / 2e-123 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.018G035100 [exp] 370 / 2e-120 AT3G24480 483 / 4e-166 Leucine-rich repeat (LRR) family protein (.1) Potri.018G151000 [exp] 365 / 9e-120 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G081200 [exp] 370 / 5e-118 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.014G036700 [exp] 342 / 3e-110 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039363 pacid=23175623 polypeptide=Lus10039363 locus=Lus10039363.g ID=Lus10039363.BGIv1.0 annot-version=v1.0 ATGAAAACCCTGAACCCTTTCATTAGTACTCTTTGGGCTATCTTTCTCTTCCTCGCTAAACCCTCTCACCAAGCTTCTCCTCCTCCTCCGCCGTCGCCGA AAAATTTCCCGACCATCTCAAACCCCAGACTCCTCAACGCCTACGTGGCCCTCTACGCATGGAAAAAAGCCATGACTTCTGACCCAAGAAACTTCACTTC CGATTGGTACGGCCCAGACGTCTGCAGCTACAACGGTGTCTTCTGCGCCCCGGCCCCCGAAGACCCTAAAATCCAAACTGTCGCCGGAATAGACATCAAC CACGCTAACATCTCAGGCTACCTCCCGGAGGATCTCGGCCTCCTCACCGACCTCGCCCTCTTCCACATCAACTCCAACCGCTTCGTTAAAACCCTCCCGT ACAACTTCCGCTACCTCAAGCTCCTCTTCGAGCTCGATATAAGCAACAACCGATTCTCCGGCGAATTCCCTTCCGTCGTGTTCGAACTTCCTTCTCTAAA GTTCCTAGACATAAGGTTCAACCAGTTCCAAGGAAACGTCCCTTCCAAGCTGTTTGAGACCAATTTTGACGCCATCTTCATAAATGACAACGGGTTCACG TCGTCGCTGCCTTCTAACTTGGGGAACTCGACGGCGTCGGTGTTGGTGTTGGCGAATAACAACTTCGGCGGGTCGTGCATCCCGGCGAGTCTGTTGACGA TGGGTCCCACGTTGACCCAGGTGATTTTGAGCAATATGGGCCTGAGGGGGTGTTTGCAGCCCAATTTAGGGGCATTGGATCAGCTGAAGGTGTTTGACGT CAGCAATAATGACCTCGTGGGTCCCCTTCCGGAATCGATGGTGAGGATGACCAAGTTGGAGCAGTTGAATGTGGCCCACAACAGGCTGTCCGGGAAGATA CCGTCTGGTATCTGCGCGTTGCCGCGGTTGAAGAATTTTACTTATTCGTACAATTTCTTTAATAAGGAACCCGACGTTTGTCTCCGGCTGCCGGCGAAAG ATGACCGGAAGAACTGTTTGTTGGAGCGGCCGTTGCAGAGGAATCCCGGTGAATGCAAGATTTACCCTGTTCATTGTAGCTCCTTTGGTTGCATGCCTCC ACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCT CCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCAC CTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCC ACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCT CCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCAC CTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCTCCGCCTCCACCTCCACCGCCGCCGCCACCTCCGCCACC TCCGCCACCACCTCCTCCCTCTCCGCCGCCTCCCTGCCCGCCTCCACCACCTCCATCGTTGCCGCCACCTCCAGTGCATCATTATGAGTACTCTTGA
AA sequence Show only first row Show all	>Lus10039363 pacid=23175623 polypeptide=Lus10039363 locus=Lus10039363.g ID=Lus10039363.BGIv1.0 annot-version=v1.0 MKTLNPFISTLWAIFLFLAKPSHQASPPPPPSPKNFPTISNPRLLNAYVALYAWKKAMTSDPRNFTSDWYGPDVCSYNGVFCAPAPEDPKIQTVAGIDIN HANISGYLPEDLGLLTDLALFHINSNRFVKTLPYNFRYLKLLFELDISNNRFSGEFPSVVFELPSLKFLDIRFNQFQGNVPSKLFETNFDAIFINDNGFT SSLPSNLGNSTASVLVLANNNFGGSCIPASLLTMGPTLTQVILSNMGLRGCLQPNLGALDQLKVFDVSNNDLVGPLPESMVRMTKLEQLNVAHNRLSGKI PSGICALPRLKNFTYSYNFFNKEPDVCLRLPAKDDRKNCLLERPLQRNPGECKIYPVHCSSFGCMPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPPPCPPPPPPSLPPPPVHHYEYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039363 [exp]	0	1
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006611 [exp]	1.7	0.9160
AT5G58750			NAD(P)-binding Rossmann-fold s...		Lus10040675 [exp]	3.2	0.9144
AT4G35680			Arabidopsis protein of unknown...		Lus10041833 [exp]	5.8	0.8534
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10027458 [exp]	6.0	0.8877
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10039006 [exp]	6.6	0.8655
AT4G26010			Peroxidase superfamily protein...		Lus10005679 [exp]	7.1	0.8655
AT1G68400			leucine-rich repeat transmembr...		Lus10040653 [exp]	10.1	0.8956
					Lus10016767 [exp]	10.5	0.8350
AT3G29034			unknown protein		Lus10033010 [exp]	14.0	0.8849
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10022385 [exp]	15.0	0.8296

Compare expression of checked genes

Lus10039363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.