Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14750 71 / 3e-14 IQD19 IQ-domain 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006613 [exp] 292 / 2e-97 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10021904 [exp] 166 / 7e-49 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10041188 [exp] 161 / 1e-46 AT4G14750 288 / 2e-93 IQ-domain 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G082600 [exp] 173 / 5e-52 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.008G156700 [exp] 167 / 2e-49 AT4G14750 307 / 6e-101 IQ-domain 19 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039366 pacid=23175461 polypeptide=Lus10039366 locus=Lus10039366.g ID=Lus10039366.BGIv1.0 annot-version=v1.0 ATGCAAGCATTGGTGACTCTCCAGGCTAAAGCTCGAGCTCAGAGGATTCGTACGGCGGAAGACGGAAGACCCCCCACCGCCAATAGACCTTACTCTTCTC ACAGAAGATCCACTCAGGAGAATCGATTCAGACAAACTAACTACGATTCTGACAAATACGGGGTGGAGGAGAACATCAAGATAGTGGAAATGGATCTGGG AGAGTCAAAAGGAACCGCCGCCACAAAGGGCAGAAACAGCTATTCATCTTACAACCAGCCACAATCGGAAAGAGGAGCAGATCGGAGATTCTCAAACCAA TATTCGCAGTCGGATTTAACGGAGATGAGTCCTAGAGCTAGCAGCGGTCATTTCGAGGAGTATTCATTCGGCACAGCTCAGAGCAGCCCGCAATGCTACT CCGCAGTCTCTAAACCCGACCCGTCCAGGGTTCCGTTCGCGTTCCCTCGACACGATTACCCGGAATCCATGGCGTCCGATTGCCAGCTGTTCCCCCGTCC TCGAACGTTGGAGCTCCGGCGTCCGTGGGACAGAACTACCAGTTGGCATGGGCGATTAAGCTGGACAGATCGTCGGTTTCGCTGCAGGAGAGCGAGTGTG GATCGAGCAGTACTGTGCTTACTAATTCCAATTACTGCAGATCGCTTGTTGGGTTCGATGTGA
AA sequence Show only first row Show all	>Lus10039366 pacid=23175461 polypeptide=Lus10039366 locus=Lus10039366.g ID=Lus10039366.BGIv1.0 annot-version=v1.0 MQALVTLQAKARAQRIRTAEDGRPPTANRPYSSHRRSTQENRFRQTNYDSDKYGVEENIKIVEMDLGESKGTAATKGRNSYSSYNQPQSERGADRRFSNQ YSQSDLTEMSPRASSGHFEEYSFGTAQSSPQCYSAVSKPDPSRVPFAFPRHDYPESMASDCQLFPRPRTLELRRPWDRTTSWHGRLSWTDRRFRCRRASV DRAVLCLLIPITADRLLGSM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10039366 [exp]	0	1
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10039367 [exp]	1.0	0.9474
					Lus10017791 [exp]	6.7	0.8313
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10017789 [exp]	9.1	0.8352
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	9.9	0.7886
AT2G35760			Uncharacterised protein family...		Lus10039060 [exp]	11.4	0.7842
AT2G20875		EPF1	epidermal patterning factor 1 ...		Lus10018576 [exp]	12.0	0.8311
AT3G49730			Tetratricopeptide repeat (TPR)...		Lus10039021 [exp]	13.0	0.7589
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10005103 [exp]	16.0	0.7123
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10009184 [exp]	16.7	0.7884
AT1G44224			ECA1 gametogenesis related fam...		Lus10039882 [exp]	16.7	0.7984

Compare expression of checked genes

Lus10039366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.