Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14746 151 / 1e-45 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035902 [exp] 81 / 1e-18 AT4G14746 84 / 7e-20 unknown protein Lus10025761 [exp] 75 / 3e-16 AT4G14746 79 / 6e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G082500 [exp] 199 / 2e-64 AT4G14746 187 / 4e-60 unknown protein Potri.008G156800 [exp] 183 / 3e-58 AT4G14746 176 / 1e-55 unknown protein Potri.013G039300 [exp] 119 / 4e-33 AT4G14746 115 / 9e-32 unknown protein Potri.005G051900 [exp] 110 / 9e-30 AT4G14746 120 / 1e-33 unknown protein Potri.003G057700 [exp] 90 / 4e-22 AT4G14746 83 / 1e-19 unknown protein Potri.001G176800 [exp] 86 / 5e-20 AT4G14746 87 / 8e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039368 pacid=23175648 polypeptide=Lus10039368 locus=Lus10039368.g ID=Lus10039368.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCCACTACTTTTGCTCTTCTGGCAACTATCCTCCCGCTTCTCATCCTCGTACAAACCCCGCTGCCCTCATCCGGCGACCTGTTATCTCCGC TATTAGCTCCGGTCATGGGGAATGTTTGTGAGAAAGTTGAATGCGGGAGAGGAAAGTGTAAACCGTCGACCAACAACAGCATCATCCCTTACGAATGCGA GTGCGACAATGGGTGGAAGCAGTCGTCCCTACCCAATCGTAGTGACGGTCTCCCCTTCCTCAATTTCCTCCCCTGCATAATCCCCAACTGTTCCATGAAT TTTGCGTGTGATAAACCAGCAGAGCCGCCGGTTCAAGACAAGGCTGGAAAACCCAACATAACCATTCTTGATCCGTGTTCCTGGGCAGACTGTGGAGGCG GATCCTGCAACAAAACTTCCATCTTCACTTACAGTTGCCAGTGTTCGGAGGGATTCAATAACCTTCTCAACACTTCCATCTTCCCTTGCTACAAAGAATG TGGGATCGGGATGGATTGTAAGGATCTAGGGATCGGGGTGCAAGGTCCTCCAGCTCCAACAGCACCTGGATTGTCGCAGAACGACGGTGCTAAGAATCAA GGTACCCCAACTGTACGGGGAATGTTCAGTTGGCCTTTGGCGTTGATGGTTTCATTAGTCGCAATCGTTCAGCTGTGA
AA sequence Show only first row Show all	>Lus10039368 pacid=23175648 polypeptide=Lus10039368 locus=Lus10039368.g ID=Lus10039368.BGIv1.0 annot-version=v1.0 MASPTTFALLATILPLLILVQTPLPSSGDLLSPLLAPVMGNVCEKVECGRGKCKPSTNNSIIPYECECDNGWKQSSLPNRSDGLPFLNFLPCIIPNCSMN FACDKPAEPPVQDKAGKPNITILDPCSWADCGGGSCNKTSIFTYSCQCSEGFNNLLNTSIFPCYKECGIGMDCKDLGIGVQGPPAPTAPGLSQNDGAKNQ GTPTVRGMFSWPLALMVSLVAIVQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14746			unknown protein		Lus10039368 [exp]	0	1
AT4G29990			Leucine-rich repeat transmembr...		Lus10038251 [exp]	3.5	0.9541
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10017629 [exp]	4.2	0.9635
AT1G70420			Protein of unknown function (D...		Lus10030612 [exp]	6.2	0.9640
AT5G06730			Peroxidase superfamily protein...		Lus10008173 [exp]	8.4	0.9259
AT5G62750			unknown protein		Lus10004267 [exp]	11.0	0.9161
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10011310 [exp]	13.0	0.9598
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10032303 [exp]	14.1	0.9509
AT1G72390			unknown protein		Lus10013170 [exp]	16.2	0.9383
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10035736 [exp]	16.6	0.9605
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	17.5	0.9584

Compare expression of checked genes

Lus10039368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.