Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50150 63 / 1e-12 Plant protein of unknown function (DUF247) (.1) AT3G44700 61 / 8e-12 Plant protein of unknown function (.1) AT3G50160 61 / 8e-12 Plant protein of unknown function (DUF247) (.1) AT2G36430 60 / 1e-11 Plant protein of unknown function (DUF247) (.1) AT3G50120 59 / 4e-11 Plant protein of unknown function (DUF247) (.1) AT4G31980 59 / 6e-11 unknown protein AT3G50180 58 / 8e-11 Plant protein of unknown function (DUF247) (.1) AT3G50130 57 / 1e-10 Plant protein of unknown function (DUF247) (.1) AT3G50170 57 / 2e-10 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT5G22540 57 / 2e-10 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009871 [exp] 115 / 2e-31 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 71 / 3e-15 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 61 / 7e-12 AT4G31980 251 / 5e-76 unknown protein Lus10027719 [exp] 61 / 1e-11 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10035569 [exp] 60 / 3e-11 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10017132 [exp] 59 / 6e-11 AT3G50120 157 / 6e-42 Plant protein of unknown function (DUF247) (.1) Lus10020563 [exp] 55 / 8e-10 AT3G47250 204 / 2e-62 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) Lus10038339 [exp] 54 / 2e-09 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 54 / 3e-09 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G017600 [exp] 74 / 1e-16 AT4G31980 229 / 3e-68 unknown protein Potri.003G181800 [exp] 74 / 2e-16 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.003G206801 [exp] 73 / 4e-16 AT4G31980 261 / 3e-80 unknown protein Potri.004G187100 [exp] 73 / 4e-16 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.001G017900 [exp] 73 / 6e-16 AT4G31980 274 / 4e-85 unknown protein Potri.003G181600 [exp] 72 / 2e-15 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 71 / 4e-15 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.T012600 [exp] 70 / 5e-15 AT4G31980 254 / 1e-77 unknown protein Potri.005G116100 [exp] 69 / 8e-15 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 67 / 4e-14 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10039369 pacid=23175520 polypeptide=Lus10039369 locus=Lus10039369.g ID=Lus10039369.BGIv1.0 annot-version=v1.0 ATGGGAAGAACTGAAACTGTCGACGATTTATCAACGCGAATCGTTGAAAAGCTTTGCGGGTCATCTCCTACTACCTCCAGGTTCAGCATCTTCAAGGTGC CTCAACAGCTACGCAAGGTTAACGAGAAGGCAAACGAGCCACAGGTACTCGCAATTGGGCCTTACCATCATGGTAGTGCACACTTGCAGAAGATGGAGGA GCACAAACTACAGTATCTTAGCCAACTTCTGCGCAGGAGAAGCGAAGAGGAATATAGCCGTGTGAGCCTGTATGTCTCGGCGATAAGGAAGCTAGAAGAA ACAACTCGGAAATGCTATGCAGATTCCTTCCCTGTAACATCATCAGATGACTTTGTCGAAATGATGCTTCCTCGTTGA
AA sequence Show only first row Show all	>Lus10039369 pacid=23175520 polypeptide=Lus10039369 locus=Lus10039369.g ID=Lus10039369.BGIv1.0 annot-version=v1.0 MGRTETVDDLSTRIVEKLCGSSPTTSRFSIFKVPQQLRKVNEKANEPQVLAIGPYHHGSAHLQKMEEHKLQYLSQLLRRRSEEEYSRVSLYVSAIRKLEE TTRKCYADSFPVTSSDDFVEMMLPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50150			Plant protein of unknown funct...		Lus10039369 [exp]	0	1
AT1G15740			Leucine-rich repeat family pro...		Lus10038107 [exp]	3.5	0.9499
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10042969 [exp]	3.7	0.9517
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	4.5	0.9526
AT1G69550			disease resistance protein (TI...		Lus10001038 [exp]	4.9	0.9423
AT1G15740			Leucine-rich repeat family pro...		Lus10008036 [exp]	7.7	0.9497
AT3G20250		APUM5	pumilio 5 (.1)		Lus10033353 [exp]	11.2	0.9418
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	13.7	0.9378
AT4G27745			Yippee family putative zinc-bi...		Lus10007773 [exp]	16.9	0.9381
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	17.2	0.9473
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10018383 [exp]	18.0	0.9448

Compare expression of checked genes

Lus10039369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.