Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14740 217 / 1e-68 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region AT3G22810 206 / 5e-63 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G43870 194 / 2e-58 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT3G63300 169 / 2e-49 FKD1 FORKED 1 (.1.2) AT4G32785 110 / 4e-30 unknown protein AT4G17350 82 / 3e-17 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G47440 80 / 1e-16 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G16670 77 / 2e-15 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G32780 45 / 3e-05 phosphoinositide binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006614 [exp] 262 / 2e-84 AT4G14740 504 / 5e-177 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10021903 [exp] 254 / 7e-84 AT5G43870 159 / 8e-47 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10041187 [exp] 209 / 1e-64 AT4G14740 315 / 1e-103 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10014703 [exp] 187 / 4e-58 AT3G22810 297 / 2e-99 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10009509 [exp] 117 / 4e-31 AT3G22810 180 / 2e-55 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10004079 [exp] 98 / 7e-24 AT3G63300 167 / 2e-47 FORKED 1 (.1.2) Lus10004734 [exp] 87 / 6e-19 AT4G17350 389 / 2e-133 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10014704 [exp] 82 / 1e-18 AT3G63300 143 / 9e-41 FORKED 1 (.1.2) Lus10009508 [exp] 44 / 3e-05 AT4G32780 71 / 4e-15 phosphoinositide binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G082400 [exp] 229 / 6e-72 AT4G14740 468 / 1e-162 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Potri.008G157000 [exp] 221 / 1e-68 AT3G22810 430 / 9e-148 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.005G213800 [exp] 200 / 1e-60 AT3G63300 388 / 7e-131 FORKED 1 (.1.2) Potri.002G049200 [exp] 197 / 1e-59 AT3G63300 418 / 1e-142 FORKED 1 (.1.2) Potri.018G042000 [exp] 111 / 9e-28 AT4G32785 159 / 1e-47 unknown protein Potri.003G077900 [exp] 98 / 5e-23 AT4G17350 356 / 4e-121 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.001G156700 [exp] 87 / 6e-19 AT4G17350 348 / 8e-118 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [flax] [poplar] Auxin_canalis Auxin canalisation CL0266 [flax] [poplar] PH PF08458 [flax] [poplar] PH_2 Plant pleckstrin homology-like region
Representative CDS sequence Show only first row Show all	>Lus10039370 pacid=23175644 polypeptide=Lus10039370 locus=Lus10039370.g ID=Lus10039370.BGIv1.0 annot-version=v1.0 ATGGAAAAGTCCTTCACCGAAATTTGGCGGCCCGACCCATCCTTCTTCTTCCGCCCTCCAGAAACCCCTAGTGACCCCATGGAATTCCTCTCCCGATCAT GGAGCGTATCGGCCATAGAGGTATCTAAGGCTCTAGCTCCTCCACCACCTCCTCCCCCAATGCTCCGCTCCAAGTCTTCCACCATCCAGGAAGACATCGC CGCCGAGCTTGACGAGGGCACCGCCTTTTCCGGCAACCCTTTCTCCTTTGCCTCGTCGGAGACCTCCCAGATGGTCATGGACCGTATCTTGTCTCAATCG CAAGAGGTGTCTCCAAGAACTTCTGGCAGGCTATCCCACAGCAGTGGCCCTCTCAACGGTTCCTTATCCGACAGCCCTCCGGTGTCGCCTTCGGAGATTG AGGACGTCAAGAGCTGCCGCCCCATTAACACCACCAACCACAATAACCTCAACTTCAACCTCCTCAATACCAATTTCCGAACTTTCTCCGGCACGCCTGT GGGCGGAGGCGGCGCTAGTAATGGCGGCGGGAAGACGGTGGGGAGCAGAGAATTGTTAGCCAGAGGTTGTGAGCTACTCAAGCGAACTCGGAAAGGGGAC CTGCACTGGAAGATTGTTTCAGTGTACATCAACAAGTCGAATCAGGTTATGCTGAAGATGAAGAGTAGACATGTTGCTGGGACCATAACCAAAAAGAAAA AGAACCTTGTGTTGGAGGTGATCAAGAACGTCCCAGCCTGGCCGGGGCGGCATCTGCTAGAGGGTGGAGAAAACCGAAGGTACTTTGGGTTGAAGACTGT GATGCGAGGCGAGGTTGAGTTTGAATGCATGAGTCAGAAGGAATATGATCTCTGGACTGAAGGCGTATCGAGGCTTCTGGCCATAGCTGCAGAAAAGAAC AACAATAGACATAAGATTTGA
AA sequence Show only first row Show all	>Lus10039370 pacid=23175644 polypeptide=Lus10039370 locus=Lus10039370.g ID=Lus10039370.BGIv1.0 annot-version=v1.0 MEKSFTEIWRPDPSFFFRPPETPSDPMEFLSRSWSVSAIEVSKALAPPPPPPPMLRSKSSTIQEDIAAELDEGTAFSGNPFSFASSETSQMVMDRILSQS QEVSPRTSGRLSHSSGPLNGSLSDSPPVSPSEIEDVKSCRPINTTNHNNLNFNLLNTNFRTFSGTPVGGGGASNGGGKTVGSRELLARGCELLKRTRKGD LHWKIVSVYINKSNQVMLKMKSRHVAGTITKKKKNLVLEVIKNVPAWPGRHLLEGGENRRYFGLKTVMRGEVEFECMSQKEYDLWTEGVSRLLAIAAEKN NNRHKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14740			Plant protein of unknown funct...		Lus10039370 [exp]	0	1
AT1G61600			Protein of unknown function (D...		Lus10030977 [exp]	1.0	0.9258
AT4G14740			Plant protein of unknown funct...		Lus10006614 [exp]	1.7	0.8980
AT1G20823			RING/U-box superfamily protein...		Lus10030728 [exp]	4.9	0.8778
AT2G36330			Uncharacterised protein family...		Lus10002372 [exp]	4.9	0.8872
AT5G67350			unknown protein		Lus10010401 [exp]	5.5	0.8885
AT1G26920			unknown protein		Lus10037195 [exp]	5.9	0.8470
					Lus10040811 [exp]	6.3	0.9090
AT5G48060			C2 calcium/lipid-binding plant...		Lus10037479 [exp]	11.0	0.8965
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10007774 [exp]	12.8	0.8669
AT2G46940			unknown protein		Lus10010083 [exp]	15.5	0.8412

Compare expression of checked genes

Lus10039370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.