Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43860 359 / 2e-124 ATCLH2 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1) AT1G19670 222 / 2e-70 CORI1, ATHCOR1, ATCLH1 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004076 [exp] 184 / 1e-55 AT1G19670 234 / 6e-75 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1) Lus10014702 [exp] 182 / 8e-55 AT1G19670 229 / 4e-73 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G082300 [exp] 417 / 4e-147 AT5G43860 370 / 1e-128 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1) Potri.005G214200 [exp] 212 / 3e-66 AT1G19670 237 / 7e-76 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1) Potri.005G214100 [exp] 50 / 1e-07 AT1G19670 59 / 2e-11 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07224 [flax] [poplar] Chlorophyllase Chlorophyllase
Representative CDS sequence Show only first row Show all	>Lus10039372 pacid=23175578 polypeptide=Lus10039372 locus=Lus10039372.g ID=Lus10039372.BGIv1.0 annot-version=v1.0 ATGTCTACTTCCACTAGTACTGATGTATTTCAGAGTGGCAGCTACAAAACCCATCTCCAAAACGTCCAACCATCATCATGTTGTAAAAGCAATCCAAACA AACCCAATTCTTCTTCTCCTCCGCCACCAAAGGCACTCTTGATCGCCTCTCCAACCGAAGCAGGTGAATTCCCAGTCCTCTTGTTCCTCCATGGCTACCT CCTCTGCAACACCTTCTACTCTCAGCTCATCCACCACATCGCCTCCCATGGCTTCATCGTCATCGCCCCTCAGCTCTACACAGTGGCGGGTCCGGATTGT ACAGAGGAGATTAAATCCGTTGCTGAAATAACCAATTGGCTATCCGAAGGATTACAGCAACTCCTCCCAGTTCATATAAATCCCGACTTAACCAAGCTCT GCCTATCCGGTCACAGCCGAGGAGGCAAAACCGCTTTTGCCCTTGCATTGAACAAGGCGGCAGCAGCATCGACTACTACATTGAGATTCTCAGCACTAAT TGGTGTTGACCCAGTTGATGGAATGGACATGGGGAAGCAAACCCCTCCGCCCGTGCTCACCTACGTTCCTCGATCTTTTGATCTCGAGATGGCGGTGATG GTGATCGGGTCTGGTCTGGGTGAGGTCAGGAGGAACCCGATGTTCCCTCCTTGTGCTCCCAAGGGGGTGAACCATGAAGAGTTCTTTAGGGAATGCAGAG AGCCTGCTTGCTATTTCGTGGTTAAAGATTATGGACATGTGGATATGCTGGATGATGAAACTAAAGGGGTTAGAGGGAAAGCTAGCTATTGCTTGTGCAA GAATGGGGAGTCCAGAGAGCCCATGAGGAGGTTTGTTGCAGGTGCTACGGTTGCGTTTATGAGAGCTTACTTGGAAGGAAATGGTGATGATTTGGCAGTG ATCAGAGGTGGGGATTCTGGTCCCGTTGAGCTTGCCACTGTTGAGTTTCTGCTTTGA
AA sequence Show only first row Show all	>Lus10039372 pacid=23175578 polypeptide=Lus10039372 locus=Lus10039372.g ID=Lus10039372.BGIv1.0 annot-version=v1.0 MSTSTSTDVFQSGSYKTHLQNVQPSSCCKSNPNKPNSSSPPPPKALLIASPTEAGEFPVLLFLHGYLLCNTFYSQLIHHIASHGFIVIAPQLYTVAGPDC TEEIKSVAEITNWLSEGLQQLLPVHINPDLTKLCLSGHSRGGKTAFALALNKAAAASTTTLRFSALIGVDPVDGMDMGKQTPPPVLTYVPRSFDLEMAVM VIGSGLGEVRRNPMFPPCAPKGVNHEEFFRECREPACYFVVKDYGHVDMLDDETKGVRGKASYCLCKNGESREPMRRFVAGATVAFMRAYLEGNGDDLAV IRGGDSGPVELATVEFLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43860		ATCLH2	ARABIDOPSIS THALIANA CHLOROPHY...		Lus10039372 [exp]	0	1
AT1G79510			Uncharacterized conserved prot...		Lus10009597 [exp]	2.4	0.9500
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10018931 [exp]	3.5	0.9430
AT5G67370			Protein of unknown function (D...		Lus10011087 [exp]	5.0	0.9330
					Lus10008379 [exp]	5.1	0.8958
AT1G64680			unknown protein		Lus10001667 [exp]	5.5	0.9405
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10042771 [exp]	6.0	0.9404
AT5G57040			Lactoylglutathione lyase / gly...		Lus10017158 [exp]	6.5	0.9312
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10040872 [exp]	9.6	0.8967
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10035846 [exp]	12.0	0.9078
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	13.2	0.9145

Compare expression of checked genes

Lus10039372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.