Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14710 341 / 7e-121 ATARD2 RmlC-like cupins superfamily protein (.1.2.3.4.5) AT4G14716 334 / 3e-118 SGB3, ATARD1 suppressor of G Beta 3, acireductone dioxygenase 1 (.1) AT2G26400 318 / 1e-111 ARD, ATARD3 acireductone dioxygenase 3 (.1) AT5G43850 266 / 2e-91 ATARD4 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006617 [exp] 442 / 2e-160 AT4G14710 342 / 2e-121 RmlC-like cupins superfamily protein (.1.2.3.4.5) Lus10021902 [exp] 258 / 3e-88 AT5G43850 303 / 1e-106 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G157500 [exp] 342 / 3e-121 AT4G14710 333 / 5e-118 RmlC-like cupins superfamily protein (.1.2.3.4.5) Potri.008G157400 [exp] 258 / 4e-88 AT5G43850 308 / 2e-108 RmlC-like cupins superfamily protein (.1) Potri.010G082101 [exp] 116 / 1e-33 AT2G26400 97 / 8e-27 acireductone dioxygenase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03079 [flax] [poplar] ARD ARD/ARD' family
Representative CDS sequence Show only first row Show all	>Lus10039375 pacid=23175715 polypeptide=Lus10039375 locus=Lus10039375.g ID=Lus10039375.BGIv1.0 annot-version=v1.0 ATGCATGCTTATTTCCCTTCTGATGTTCCTTCTGGAGGAAGCCTACAAGTTATTAACTGGAAGATGTACATGCTGCAGGATACAAGAGAGGAAGTCATTC AGGCATGGTACATGGATGACAGTGATGAGGACCAGAGGTTGCCTCATCACAAGAATCCACCAGAGTATGTCTCCCTGGACAAACTTGCAGAGCTTGGAGT GCTCAGTTGGCGCTTGGATGCTGACAACTATGAAACTGATGAAGAGCTGAAGAAGATCCGTAAAGATCGTGGATATTCCTACGTGGATTTCTGCGAGGTT TGCCCAGAGAAGCTGCCAAATTATGAACAGAAAATAAAGAACTTCTACGAGGAACATCTGCACACTGATGAGGAGATTCGCTATGCTGTTGGTGGAAGTG GCTATTTTGATGTGAGGGATCGTAATGAAAAATGGATCCGTGTGTGGGTGAAGAAAGGAGGAATGATTGTCTTACCAGCCGGAATTTACCATCGATTTAC TCTGGATACAGATAACTACATTAAGGCTATGAGACTATTTGTGGGTGATCCTGTTTGGACACCGTTCAATCGCCCCCATGACGAGCTGCCAGCAAGGAAG GAGTATATTGAAACATTCATCGGAGGGGGAGATCGTGCTGTTGATGCTACTGCATAA
AA sequence Show only first row Show all	>Lus10039375 pacid=23175715 polypeptide=Lus10039375 locus=Lus10039375.g ID=Lus10039375.BGIv1.0 annot-version=v1.0 MHAYFPSDVPSGGSLQVINWKMYMLQDTREEVIQAWYMDDSDEDQRLPHHKNPPEYVSLDKLAELGVLSWRLDADNYETDEELKKIRKDRGYSYVDFCEV CPEKLPNYEQKIKNFYEEHLHTDEEIRYAVGGSGYFDVRDRNEKWIRVWVKKGGMIVLPAGIYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDELPARK EYIETFIGGGDRAVDATA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10039375 [exp]	0	1
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10006617 [exp]	1.0	0.9610
AT3G48180			unknown protein		Lus10027187 [exp]	2.8	0.9051
AT1G27000			Protein of unknown function (D...		Lus10036718 [exp]	3.5	0.8999
AT5G19930			Protein of unknown function DU...		Lus10033068 [exp]	10.2	0.9071
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014496 [exp]	11.6	0.8799
AT1G56423			unknown protein		Lus10020695 [exp]	11.7	0.8766
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10035184 [exp]	12.3	0.8875
					Lus10022600 [exp]	12.5	0.8657
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10004382 [exp]	13.2	0.9116
AT5G09680		RLF	reduced lateral root formation...		Lus10039342 [exp]	15.1	0.9148

Compare expression of checked genes

Lus10039375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.