Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22830 352 / 2e-119 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT4G17750 273 / 2e-87 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT2G26150 266 / 9e-87 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT1G32330 268 / 6e-86 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT5G16820 261 / 4e-83 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G02990 250 / 4e-79 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT3G51910 234 / 2e-75 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT5G43840 231 / 9e-74 HSF AT-HSFA6A heat shock transcription factor A6A (.1) AT3G63350 228 / 1e-72 HSF AT-HSFA7B HEAT SHOCK TRANSCRIPTION FACTOR A7B, winged-helix DNA-binding transcription factor family protein (.1) AT5G03720 195 / 2e-58 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006618 [exp] 587 / 0 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000049 [exp] 307 / 7e-105 AT3G22830 124 / 1e-33 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10014698 [exp] 308 / 9e-103 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000492 [exp] 294 / 2e-97 AT3G22830 365 / 1e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10022083 [exp] 283 / 4e-93 AT3G22830 314 / 1e-104 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000312 [exp] 272 / 1e-87 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 271 / 2e-87 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10013797 [exp] 259 / 4e-84 AT2G26150 314 / 5e-106 heat shock transcription factor A2 (.1.2) Lus10030956 [exp] 263 / 5e-84 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G082000 [exp] 375 / 3e-129 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 361 / 4e-124 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.005G214800 [exp] 325 / 1e-109 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.002G048200 [exp] 319 / 3e-107 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G226800 [exp] 271 / 4e-88 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.001G138900 [exp] 274 / 1e-87 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 273 / 2e-87 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.013G079800 [exp] 234 / 9e-73 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.006G148200 [exp] 229 / 3e-70 AT2G26150 256 / 4e-81 heat shock transcription factor A2 (.1.2) Potri.006G115700 [exp] 216 / 2e-65 AT5G03720 308 / 5e-100 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10039376 pacid=23175686 polypeptide=Lus10039376 locus=Lus10039376.g ID=Lus10039376.BGIv1.0 annot-version=v1.0 ATGATGAATAATCCTAGAGGAAGAAACAGCTGTGGGAGCACCTCCTCATCGTCGTCGGGCGGAAGAGGACGAGGAGGAGAAGCGCCGGTGCCTCAACCGG TGGAGGGGCTCCACGAGATGGGTCCGCCGCCGTTCCTTAGCAAGACTTATGAGATAGTGGAGGACTCCGGCACCAACGACATCGTTTCATGGAGCAGTGG TAACAACAGCTTCGTGGTGTGGGATCCTCAGGCATTTTCATTGACTCTCCTCCCAAAGTACTTCAAGCACAACAATTTCTCCAGCTTCGTCCGCCAGCTC AACACCTATGGGTTTAGGAAAGTTGATCCAGACAGATGGGAGTTTGCAAATGAAGGGTTTTTAAGAGGCCAAAAGCATCTCCTCAAACTCATAAGGAGGA GAAAGACTACTCAACCCACCACCCAATCCACCTTAGTTGATCCTTGTGTCGAGGTTGGCACGTTCGGAATAGAGAGCGAGCTGGAGCAACTACGACGAGA CAAACAGGTTCTGATGATGGAGCTAGTGAAGCTGAGGCAACAGCAGCAGACGACCAAAGAATGCCTCCAGATGCTGGAGCAAAGGCTGAGACGGAACGAG GCCAAGCAGCAGCAGATGATGACTTTCCTCGCGAGAGCAGTAAAGAACCCGGACTTCTTGCAGCAGCTGGTGCATCAGAAGGGTATCATGAGGGAGCTTG AGAATGCCATCACTAAGAAAAGAAGACGCCGCCCTATCGATCAAGCAGCTATTCATATAAATGTTGAGGCTGGAGATCCTAGTTTTGTCAAGATTGAGCC TGCAGATCAGGAGTACTTCGGTAGAGTGAATGATGATGACATTGCTGAGTTGGACTCGTTGGCTCTGGACATTCAAGCTGGGCTTGGTGGATTTTCAGCA ACAAGGAGGATTGAGAATTTTGAAGAGGAAGGAGGAATTGAAGTAGATCATGATGGGAGAAAGATTATTAATGACCATGAAGGGTACTTATGGGAACATT TACTGGATGATGAAATTGGGATAGAAATGGGTTTGAATATGGGACATGAAGATGGTGATGATGATGGGAATGTGGATGTGCTTGTGGAGCAATTGGGTTT CTTGGATTCTGACATTATGTAG
AA sequence Show only first row Show all	>Lus10039376 pacid=23175686 polypeptide=Lus10039376 locus=Lus10039376.g ID=Lus10039376.BGIv1.0 annot-version=v1.0 MMNNPRGRNSCGSTSSSSSGGRGRGGEAPVPQPVEGLHEMGPPPFLSKTYEIVEDSGTNDIVSWSSGNNSFVVWDPQAFSLTLLPKYFKHNNFSSFVRQL NTYGFRKVDPDRWEFANEGFLRGQKHLLKLIRRRKTTQPTTQSTLVDPCVEVGTFGIESELEQLRRDKQVLMMELVKLRQQQQTTKECLQMLEQRLRRNE AKQQQMMTFLARAVKNPDFLQQLVHQKGIMRELENAITKKRRRRPIDQAAIHINVEAGDPSFVKIEPADQEYFGRVNDDDIAELDSLALDIQAGLGGFSA TRRIENFEEEGGIEVDHDGRKIINDHEGYLWEHLLDDEIGIEMGLNMGHEDGDDDGNVDVLVEQLGFLDSDIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10039376 [exp]	0	1
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	1.4	0.9795
AT1G45688			unknown protein		Lus10029743 [exp]	2.0	0.9751
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	8.9	0.9488
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10021904 [exp]	9.4	0.9560
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	11.4	0.9593
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10034343 [exp]	12.0	0.9453
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10006618 [exp]	12.5	0.9452
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10032553 [exp]	13.3	0.8925
AT3G44220			Late embryogenesis abundant (L...		Lus10043410 [exp]	13.4	0.9553
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	13.5	0.9498

Compare expression of checked genes

Lus10039376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.