Plant FIBer expression Database

Lus10039377 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G04200 936 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006619
[exp]
1375 / 0 AT1G04200 991 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G081800
[exp]
1085 / 0 AT1G04200 987 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0456 Golgi_traff PF09742 Dymeclin Dyggve-Melchior-Clausen syndrome protein
Representative CDS sequence
>Lus10039377 pacid=23175599 polypeptide=Lus10039377 locus=Lus10039377.g ID=Lus10039377.BGIv1.0 annot-version=v1.0
ATGGGAGCGGCGCCTTCTACCCCGGGGCGGAGTGAAGCTCGTCCGGTGGAAACAGCCGAGTATTTAGTTGGAACATTTGTCGGTGAGAAATCCTTCCCTG
TCGGTTCAGATTTCTGGCAGAAACTATTGGAGCTCCCTCTTAATCTGCGATGGCCTGCTGATCGCGTCCGCGAAGCTTGCCAGCTGTTTGCACAAAACAA
CTCTTGTACCCGGCATCTTGCGAAGATTCTTATTCACCTGGCGCAATGTTTGCAAGAGTGTATTTCAGTGTCTGGTGCACCGTCATCCACGTACCTCAAG
GCTAGCAATGCAGCTTATATTTCCTCCGTGTTTCTCAAGCACCTATTTGAAAGACCAGAGAGCAACAATGTCGAGGAGCTATATCTTTCACTGAATGACA
GCGAGCCTGTACCTCAAGACTTTGTAATAGATCCAAATCTGGAACGTCTTGTCATGACTAATGTGCTCAAGTTCATCAGTTTAGTAGATGTCAGTCCAAA
CACATATGGTCTTCATCATGAGTTGTTAAACTTCATGTTTGTTGCAATGTCAACCCAACTGCTGTATGGGCCAACTCCAGCCCCAACTGATATGAATCCA
TTTATTGATGCTGCAATGACTCAGGAAAATTCCTTGGTTACCTTGGTCGTTCAAAGGTTGCTGCTCAATTACATAAAGCGGCCTCGTATACCGTTGAATG
TTGGATCTTATCCCCAATTTGGAGAGGCAGGTCAATCTGGGGTTCTGCAGAGAGTGGGCTCTGCTGCTGCAAATTTGGTCTTACTGCCATTCAACTATTT
GGTGAATTCAAGTGGTCAAGGTGCAAGGAACCCATTGGCAGAGTGCAGCCTCCACGTGTTACTTATTCTTAATTATTATCATAAATGCAACGTGGCAGAT
GGGTCCATAACAGATAGAAGTGATGACAGTGGAACATCAGATTCTCTTTCAAAATCAAACCTCTACTTCTCAGAGAACCCCTACTGCAAAGTTCTGGAAA
CTATGAGGGATATCGATCTTGATCGTGTTGATGTTGAGAAGAACGCACATAATGCTTCAGTTGTGAGGTTGCCGTTTGCATCACTTTTTGATACACTCGG
CATGTGCTTGGCTGATGAGACGGCAGATTTACTGCTTTACACATTGTTGCATGGGAACTCTGATTTCTTGGAGTATGTTCTAGTGCGGACTGATGTAGAT
ACACTGTTGATGCCAATTTTGGAGACTTTATACAATGCTTCAAGGACGTCCTCTAATCATATCTACATCTTGCTGATTATACTTCTGATATTGAGTCAAG
ATTCTTCTTTTAATGCGGGCATTCACAAGATGATATTGACTAGTGTTCCATGGTATCAAGAACATCTTCTCCATCAAACGTCTCTTGGTTCATTGATGGT
GATAATTCTGATAAGGACCGTGAAGTATAATCTATCAAAACTGAGGGATCTATACTTGCACACAACTTGCCTGGCAACTTTGGCAAACATGGCTCCTCAT
GTCCATCGTTTGAGTCCCTATGCATCACAGAGACTGGTTAGCCTCTTCTACATGCTGTCACGCAAGTACAATAAGCTTGCAGAGAGGATTGATGAGAAGA
GAGGGAAGGTTGGGTGGGTTGAAGAGAACGACTTTGCACAAGATATGTCAGCAGAACTACACATATATGCCGACTTCCTTAGGATTGTCCTTGAAATCCT
AAATGCTATTTTGACGTATGCTCTTCCTCGAAATCCGGAGGTGGTATATGCAATCATGCACAGGCAGGAGGTTTTTCAGCCTTTCAAGAGTCATCCACGC
TTCAATGAGTTGATAGAAAATATCTTTATGGTTCTTGATTATTTCAATAGCCGCATCGATGCACAGAAAGAAGATGGCGAATGGTCCGTGGAGAAGGTCC
TCCAACTCATAATCAGTATTTGCCGATCATGGCGGGGTGAAGGGATGAAGATGTTCACTCAATTGCATTTCTCCTACGAGCAAGAGAGTCATCCGGAAGA
ATTCTTTACCCCATACATTTGGCGGCTAACATTTTCGCAATGCGGATTCACTTTCGATCCCAATGCGATAATCCTTTTCCCTCTTGATTTGCCTGTGATA
AAAGCGGTCAGCGAGGAAGGTGAACAGAATAACAGCAACGAGAATGGAGCGGCGAAACATCACACTGTTCTGCTCGATGTGTAG
AA sequence
>Lus10039377 pacid=23175599 polypeptide=Lus10039377 locus=Lus10039377.g ID=Lus10039377.BGIv1.0 annot-version=v1.0
MGAAPSTPGRSEARPVETAEYLVGTFVGEKSFPVGSDFWQKLLELPLNLRWPADRVREACQLFAQNNSCTRHLAKILIHLAQCLQECISVSGAPSSTYLK
ASNAAYISSVFLKHLFERPESNNVEELYLSLNDSEPVPQDFVIDPNLERLVMTNVLKFISLVDVSPNTYGLHHELLNFMFVAMSTQLLYGPTPAPTDMNP
FIDAAMTQENSLVTLVVQRLLLNYIKRPRIPLNVGSYPQFGEAGQSGVLQRVGSAAANLVLLPFNYLVNSSGQGARNPLAECSLHVLLILNYYHKCNVAD
GSITDRSDDSGTSDSLSKSNLYFSENPYCKVLETMRDIDLDRVDVEKNAHNASVVRLPFASLFDTLGMCLADETADLLLYTLLHGNSDFLEYVLVRTDVD
TLLMPILETLYNASRTSSNHIYILLIILLILSQDSSFNAGIHKMILTSVPWYQEHLLHQTSLGSLMVIILIRTVKYNLSKLRDLYLHTTCLATLANMAPH
VHRLSPYASQRLVSLFYMLSRKYNKLAERIDEKRGKVGWVEENDFAQDMSAELHIYADFLRIVLEILNAILTYALPRNPEVVYAIMHRQEVFQPFKSHPR
FNELIENIFMVLDYFNSRIDAQKEDGEWSVEKVLQLIISICRSWRGEGMKMFTQLHFSYEQESHPEEFFTPYIWRLTFSQCGFTFDPNAIILFPLDLPVI
KAVSEEGEQNNSNENGAAKHHTVLLDV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G04200 unknown protein Lus10039377
[exp]
0 1
AT1G04200 unknown protein Lus10006619
[exp]
1.4 0.9278
AT5G48560 bHLH bHLH078 basic helix-loop-helix (bHLH) ... Lus10003172
[exp]
2.4 0.8414
AT2G47070 SBP SPL1 squamosa promoter binding prot... Lus10038043
[exp]
3.2 0.8207
AT1G27210 ARM repeat superfamily protein... Lus10010730
[exp]
4.5 0.8539
AT1G58520 RXW8 lipases;hydrolases, acting on ... Lus10004550
[exp]
7.3 0.8273
AT4G31080 Protein of unknown function (D... Lus10009546
[exp]
7.3 0.8228
AT5G62810 ATPEX14, PED2, ... PEROXISOME DEFECTIVE 2, peroxi... Lus10002377
[exp]
8.1 0.7294
AT5G51710 ATKEA5, KEA5 K+ efflux antiporter 5, ARABID... Lus10031106
[exp]
9.2 0.8014
AT2G43160 ENTH/VHS family protein (.1.2.... Lus10019571
[exp]
9.4 0.8120
AT5G24810 ABC1 family protein (.1.2) Lus10020168
[exp]
9.8 0.8026

Lus10039377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.