Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22840 165 / 4e-52 ELIP1 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) AT4G14690 165 / 5e-52 ELIP2 EARLY LIGHT-INDUCIBLE PROTEIN 2, Chlorophyll A-B binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006620 [exp] 281 / 4e-98 AT3G22840 183 / 4e-59 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Lus10039379 [exp] 268 / 3e-92 AT4G14690 196 / 7e-64 EARLY LIGHT-INDUCIBLE PROTEIN 2, Chlorophyll A-B binding family protein (.1) Lus10006621 [exp] 244 / 5e-83 AT3G22840 194 / 3e-63 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G158000 [exp] 171 / 2e-54 AT3G22840 192 / 6e-63 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Potri.008G158200 [exp] 168 / 2e-53 AT3G22840 194 / 2e-63 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Potri.008G157750 [exp] 162 / 5e-51 AT3G22840 191 / 4e-62 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Potri.008G157900 [exp] 161 / 9e-51 AT3G22840 192 / 6e-63 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10039378 pacid=23175566 polypeptide=Lus10039378 locus=Lus10039378.g ID=Lus10039378.BGIv1.0 annot-version=v1.0 ATGGCATTGACATCTGCAACTCTCCAAACAATCTTCGTCAGCCCAGCCGCAGCTAGCCGGGCTAGATCCACCTACTTGCTTCCTCGCATTGCTTCTGTAC CCAGGATCTCCAGAAATGCAGTCAGATGCATGGCCACTGGGGAAGATGAGAAAGTAAAGCCCGTGGAATCCGTCTCCTCGCCGCCACCTTCAACTCCCAA GCCACAGCCTAAGGTGAGCACAAAGTTCGGTGACGTGTTTGCTTTCAGCGGGCCGGCGCCAGAGAGGATCAACGGCAGGCTGGCGATGATTGGTTTCGTG ACCGCTTTGGCGGTGGAGCTATCCAACGGCCAGGATGTGTTTACTCAATTGTCAGCTGGAGGGTCCTCTTGGTTCCTATTCATCAGCGGGCTGTTCACTG CTGCTTCGCTGGTTCCAATGTTCGAAGGTGTTACCGCTGAGTCGAAATCGGATGGGTTCATGACCTCTAATGCTGAGATCTGGAACGGTAGATTGGCTAT GATAGGTTTGGTTGCCCTCGCCGTCACTGAATATGTTAAAGGTGGACCCTTTGTGTAA
AA sequence Show only first row Show all	>Lus10039378 pacid=23175566 polypeptide=Lus10039378 locus=Lus10039378.g ID=Lus10039378.BGIv1.0 annot-version=v1.0 MALTSATLQTIFVSPAAASRARSTYLLPRIASVPRISRNAVRCMATGEDEKVKPVESVSSPPPSTPKPQPKVSTKFGDVFAFSGPAPERINGRLAMIGFV TALAVELSNGQDVFTQLSAGGSSWFLFISGLFTAASLVPMFEGVTAESKSDGFMTSNAEIWNGRLAMIGLVALAVTEYVKGGPFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10039378 [exp]	0	1
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006620 [exp]	1.4	0.9240
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10006759 [exp]	2.4	0.9026
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016869 [exp]	3.2	0.8862
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10007586 [exp]	4.2	0.9076
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10037734 [exp]	4.5	0.8767
					Lus10016101 [exp]	4.9	0.8782
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10015993 [exp]	5.2	0.8779
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10041036 [exp]	6.0	0.8825
					Lus10029619 [exp]	6.9	0.8157
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10011597 [exp]	8.8	0.8793

Compare expression of checked genes

Lus10039378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.