Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34380 377 / 3e-130 5'-3' exonuclease family protein (.1.2) AT3G52050 90 / 2e-19 5'-3' exonuclease family protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006622 [exp] 702 / 0 AT1G34380 409 / 2e-142 5'-3' exonuclease family protein (.1.2) Lus10025723 [exp] 74 / 5e-15 AT3G52050 307 / 2e-104 5'-3' exonuclease family protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G114400 [exp] 424 / 6e-148 AT1G34380 423 / 2e-148 5'-3' exonuclease family protein (.1.2) Potri.013G125700 [exp] 77 / 3e-15 AT3G52050 510 / 1e-180 5'-3' exonuclease family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF02739 [flax] [poplar] 5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain CL0464 [flax] [poplar] 5_3_exonuc_C PF01367 [flax] [poplar] 5_3_exonuc 5'-3' exonuclease, C-terminal SAM fold
Representative CDS sequence Show only first row Show all	>Lus10039380 pacid=23175591 polypeptide=Lus10039380 locus=Lus10039380.g ID=Lus10039380.BGIv1.0 annot-version=v1.0 ATGGGGCTGAATATTGTGGACGTTGCCGTTCCCGCCGCTGTCCATCTTCCCGCTATAAAACTGTTTCCTTCCGTTCCCCTGCAATCGGTGTATCTTCGCG CTAGCAAGATTCCATTAAAGCGAACTAGCGGGGTTCGTGCAGCACTGGTTTCAGCATCTCCTTCTCCTTGTTCCACTCCCGATGGGGCATTTTGTCGAAC AATTGGTGGGCAGTCCTCAAAGAAAGGCGACATTGGTATAAATCCCCAAGATCCCAGCACAAACAGGAAAAGGGTGTTCTTCTTGGACGTCAATCCCCTT TGTTACCACGAAGGCAAGCCCAGCCTGGACGCTTTTGGTCACTGGATTAACCTGTTCTTCTCTCAGGTCAGTCTTACTGATCCTGTTATTGCCGTCTTTG ATGGGGAAGGTGGGTCCAAGCACCGGAGGCAGTTGCTACCTTCGTATAAAGAACACCGGATGAAATTTTTAGCTGATCCTTTATCACCGAGATCACAGAA GTACTCAAAGGACCGCGTGGAGAGAGCTCAGGTAGTTATGGATGTACTAGCGAAATGCAACATCCCGATAGTGAAAGTTCAGGGTCAGGAAGCAGATGAT GTTGTGGCAACTCTGGCAGAGCAAGCTCTTAGTGGAGGCTACAAGGTGGTTATTGCCTCCCCTGACAAGGACTTCAAGCAGTTGATTTCTGACGATGTTC AGATTGTTCAGCCTCTTACTGACCTGAAAAGATGGTCTTTTTATACCATGAAGCATTACTTGGCTCAGTACAATTGTGACCCGTGCTCGGATCTGAGCTA TAGGTGCATTGTTGGTGATGAAGTTGACGGTGTTCCTGGGTTGCAAACTGTTGCCCCTTCCTTTGGTCGCAAGACTGCTCTAAAGCTCTTGAAGAAACAT GGGTCATTGGAGAACTTATTGAATGCAGCTGCAGTAAGGACTGTGGGGAAACCGTATATACAAGATGCCCTCATACAGAATGTCGATTACCTGCGGAGGA ACTATCAAGTTCTTGCCCTGAGGAAAGATGTTGATGTTCTTCTTCAAGATGATTGGTTGGTTCAAAGAGATCGAGTTCACGATTCTGATGCTCTAGCCGA CTTCTTCAAGTTATTGGCGCAAAAGCATTTATCAGAAATGGTATTGACGCAAAAGCGCAGAGGCTACACAAAGAAATGA
AA sequence Show only first row Show all	>Lus10039380 pacid=23175591 polypeptide=Lus10039380 locus=Lus10039380.g ID=Lus10039380.BGIv1.0 annot-version=v1.0 MGLNIVDVAVPAAVHLPAIKLFPSVPLQSVYLRASKIPLKRTSGVRAALVSASPSPCSTPDGAFCRTIGGQSSKKGDIGINPQDPSTNRKRVFFLDVNPL CYHEGKPSLDAFGHWINLFFSQVSLTDPVIAVFDGEGGSKHRRQLLPSYKEHRMKFLADPLSPRSQKYSKDRVERAQVVMDVLAKCNIPIVKVQGQEADD VVATLAEQALSGGYKVVIASPDKDFKQLISDDVQIVQPLTDLKRWSFYTMKHYLAQYNCDPCSDLSYRCIVGDEVDGVPGLQTVAPSFGRKTALKLLKKH GSLENLLNAAAVRTVGKPYIQDALIQNVDYLRRNYQVLALRKDVDVLLQDDWLVQRDRVHDSDALADFFKLLAQKHLSEMVLTQKRRGYTKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34380			5'-3' exonuclease family prote...		Lus10039380 [exp]	0	1
AT1G71420			Tetratricopeptide repeat (TPR)...		Lus10006073 [exp]	8.9	0.7853
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10037788 [exp]	11.0	0.8353
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031908 [exp]	12.5	0.8154
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	24.1	0.8175
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10031994 [exp]	24.2	0.7980
AT1G30960			GTP-binding family protein (.1...		Lus10032427 [exp]	33.2	0.8091
AT5G06400			Pentatricopeptide repeat (PPR)...		Lus10013602 [exp]	42.6	0.7837
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041326 [exp]	44.3	0.8007
AT3G02330			Pentatricopeptide repeat (PPR)...		Lus10014594 [exp]	46.7	0.7842
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10024222 [exp]	51.0	0.7755

Compare expression of checked genes

Lus10039380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.