Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43830 372 / 8e-132 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G22850 368 / 4e-130 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G15450 229 / 3e-75 Aluminium induced protein with YGL and LRDR motifs (.1.2.3) AT4G27450 229 / 3e-75 Aluminium induced protein with YGL and LRDR motifs (.1) AT5G19140 206 / 2e-66 AtAILP1, AILP1 Aluminium induced protein with YGL and LRDR motifs (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006624 [exp] 511 / 0 AT5G43830 374 / 2e-132 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10041181 [exp] 458 / 8e-166 AT5G43830 369 / 1e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10033418 [exp] 221 / 6e-72 AT4G27450 369 / 2e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10034883 [exp] 217 / 2e-70 AT4G27450 365 / 6e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10018484 [exp] 214 / 2e-69 AT4G27450 305 / 3e-105 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10011191 [exp] 204 / 2e-65 AT4G27450 303 / 2e-104 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10034038 [exp] 201 / 9e-65 AT5G19140 389 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1.2) Lus10010505 [exp] 199 / 1e-63 AT5G19140 392 / 4e-140 Aluminium induced protein with YGL and LRDR motifs (.1.2) Lus10021899 [exp] 179 / 3e-51 AT1G04210 609 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G158400 [exp] 429 / 3e-154 AT5G43830 388 / 3e-138 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.010G081600 [exp] 429 / 4e-154 AT5G43830 391 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G122100 [exp] 230 / 1e-75 AT4G27450 428 / 7e-154 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.001G403000 [exp] 228 / 9e-75 AT4G27450 436 / 3e-157 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G049900 [exp] 219 / 3e-71 AT4G27450 383 / 6e-136 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.004G040600 [exp] 219 / 3e-71 AT4G27450 366 / 2e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.008G203400 [exp] 194 / 1e-61 AT5G19140 397 / 4e-142 Aluminium induced protein with YGL and LRDR motifs (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF12481 [flax] [poplar] DUF3700 Aluminium induced protein
Representative CDS sequence Show only first row Show all	>Lus10039382 pacid=23175457 polypeptide=Lus10039382 locus=Lus10039382.g ID=Lus10039382.BGIv1.0 annot-version=v1.0 ATGTTAGCTGTGTTTGACAAGAACGTGGCCAAGTGCCCGCCTGAGCTCCAGAGCCCGGCTTCCGGTGGGTCCGCATCCGCTCTCACAAATGGGTTCTTGG CCAACCATTTCCAGCCCCTTCACCCTTCTTCCGTCGTCGTCAATCTCGCCTCTTCTGGCTTGATCTCCTACTCCCTTGACAAGAACAACCCTCTCGTCCC TAGATTATTCGCTGTTGTGGACGACATTTTCTGCTTGTTCCAAGGTCACATTGAGAATGTTGCAATCCTTAAGCAACAGTATGGATTAAACAAAGCTGCA AATGAGGTTACCATCATAATTGAAGCTTACAGAACTCTAAGAGACCGTGGCCCCTACCCTCCTGATCAAGTCATCAGAGACATTCAGGGGAAGTTTGCTT TCGTGCTGTATGATAGTGCTTCCAAAGTCACTCTGTTTGCTTCTGATGCTGATGGAAGCGTACCCTTCTTCTGGGGAACTGATTCCGAAGGTCAACTTGT TCTATCTGATGACACTGAAGTTATTCAGAAGGGATGTGGGAAATCTTATGCTCCATTCCCCAAAGGGTGCTTCTTTACCACTTCTGGAGGGTTGAGGAGC TTTGAACACCCTCTGAATGAGTTGAAGCCAATACCAAGAGTTGACAGCTCAGGGCAGGTTTGTGGCTCCAACTTCAAGGTGGATGCAGATGCTAAGAAGG AGAGCGGTGGGATGCCCAGAGTCGGAAGTTCTTACAACTGGTCCCAACACTATTGA
AA sequence Show only first row Show all	>Lus10039382 pacid=23175457 polypeptide=Lus10039382 locus=Lus10039382.g ID=Lus10039382.BGIv1.0 annot-version=v1.0 MLAVFDKNVAKCPPELQSPASGGSASALTNGFLANHFQPLHPSSVVVNLASSGLISYSLDKNNPLVPRLFAVVDDIFCLFQGHIENVAILKQQYGLNKAA NEVTIIIEAYRTLRDRGPYPPDQVIRDIQGKFAFVLYDSASKVTLFASDADGSVPFFWGTDSEGQLVLSDDTEVIQKGCGKSYAPFPKGCFFTTSGGLRS FEHPLNELKPIPRVDSSGQVCGSNFKVDADAKKESGGMPRVGSSYNWSQHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	0	1
AT3G58750		CSY2	citrate synthase 2 (.1)		Lus10031384 [exp]	1.0	0.9208
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10025584 [exp]	2.4	0.8583
AT1G21840		UREF	urease accessory protein F (.1...		Lus10039022 [exp]	3.2	0.8280
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031311 [exp]	4.0	0.8575
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	5.3	0.8697
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	6.3	0.8086
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10036834 [exp]	8.1	0.8005
AT3G19990			unknown protein		Lus10017359 [exp]	11.2	0.8202
AT1G71980			Protease-associated (PA) RING/...		Lus10009438 [exp]	11.8	0.8007
AT5G47040		LON2	lon protease 2 (.1)		Lus10003009 [exp]	12.4	0.7782

Compare expression of checked genes

Lus10039382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.