Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22880 585 / 0 ARLIM15, ATDMC1 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) AT5G20850 322 / 6e-109 ATRAD51 RAS associated with diabetes protein 51 (.1) AT2G45280 108 / 2e-26 ATRAD51C RAS associated with diabetes protein 51C (.1.2) AT5G57450 81 / 5e-17 ATXRCC3, XRCC3 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) AT2G28560 65 / 2e-11 ATRAD51B, RAD51B DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) AT1G07745 54 / 8e-08 SSN1, ATRAD51D, RAD51D SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006625 [exp] 702 / 0 AT3G22880 582 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Lus10027654 [exp] 268 / 2e-87 AT5G20850 531 / 0.0 RAS associated with diabetes protein 51 (.1) Lus10039928 [exp] 267 / 2e-87 AT5G20850 530 / 0.0 RAS associated with diabetes protein 51 (.1) Lus10000790 [exp] 106 / 2e-26 AT2G45280 388 / 3e-136 RAS associated with diabetes protein 51C (.1.2) Lus10015220 [exp] 67 / 2e-12 AT1G07745 273 / 6e-91 SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) Lus10004464 [exp] 66 / 9e-12 AT5G57450 325 / 2e-111 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) Lus10023341 [exp] 62 / 2e-10 AT2G28560 468 / 2e-163 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10038467 [exp] 57 / 7e-09 AT2G28560 430 / 2e-151 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G081500 [exp] 625 / 0 AT3G22880 613 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Potri.006G135200 [exp] 322 / 4e-109 AT5G20850 622 / 0.0 RAS associated with diabetes protein 51 (.1) Potri.008G158500 [exp] 257 / 6e-86 AT3G22880 238 / 5e-79 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Potri.014G068100 [exp] 95 / 5e-22 AT2G45280 398 / 2e-139 RAS associated with diabetes protein 51C (.1.2) Potri.018G093100 [exp] 69 / 6e-13 AT5G57450 312 / 1e-106 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08423 [flax] [poplar] Rad51 Rad51
Representative CDS sequence Show only first row Show all	>Lus10039383 pacid=23175626 polypeptide=Lus10039383 locus=Lus10039383.g ID=Lus10039383.BGIv1.0 annot-version=v1.0 ATGATCGCCACTATGAAAGCCGAAGATGTGAACCAGTTGCAGTTGGTCGAGCGAGAGGAAATTGACGACGAAGACGAACTGTTTGAAGCGATCGATAAGC TGATATCTCAAGGAATCAATGCCGGAGATGTGAAGAAGCTTCAAGATGCAGGGATCTATACCTGCAATGGTCTGATGATGCATACAAAGAAGAATTTGAC CGGGATCAAGGGCTTGTCTGAGGCTAAGGTTGACAAGATATGCGAAGCTGCAGAGAAGTTAGTGAATTTTGGTTATATTACTGGCAGTGACGCTCTACTC AAACGAAAGGCTATTGTACGCATCACAACTGGAAGCCAAGCACTTGATGAACTGTTGGGCGGTGGAGTTGAAACTTCTTGTATTACAGAAGCCTTCGGAG AGTTCAGGTCTGGGAAGACGCAGCTCGCACATACACTATGTGTGTCCACTCAGCTTCCGACAAACATGAATGGAGGGAATGGAAAAGTTGCTTACATAGA TACTGAAGGAACTTTGTATCCTTCATGTGTAGATGCCATCCTAGAGTTTAATGAGAACTCCCGCCCTGATAGAATTGTTCCCATTGCGGAAAGATTTGGC ATGGATCCAGGAGCTGTGCTTGATAATATCATTTATGCTCGCGCATACACATACGAGCACCAATACAATCTGCTCCTTGGCCTGGCAGCAAAGATGTCTG AAGAACCATTCAGGCTCTTGATTGTGGACTCGGTAATTGCCCTCTTCAGAGTGGATTTCACTGGCAGAGGCGAACTTGCTGAACGACAGCAAAAGTTGGC ACAAATGCTGTCCCGGTTGACTAAGATAGCTGAGGAATTCAATGTGGCAGTATACATGACCAACCAAGTGATTGCCGACCCTGGCGGTGGAGTATTCATA TCAGACCCCAAGAAACCAGCCGGAGGCCATGTGCTAGCACATGCTGCTACAATCAGGTTGATGTTCAGGAAGGGAAAAGGCGAACAACGTGTTTGCAAGG TGTTTGACGCCCCCAATCTTCCCGAGGCTGAAGCAATATCCTTTTACCTCACCTCTTTATTCAACACTCTGCCTTTTCAGTAG
AA sequence Show only first row Show all	>Lus10039383 pacid=23175626 polypeptide=Lus10039383 locus=Lus10039383.g ID=Lus10039383.BGIv1.0 annot-version=v1.0 MIATMKAEDVNQLQLVEREEIDDEDELFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLVNFGYITGSDALL KRKAIVRITTGSQALDELLGGGVETSCITEAFGEFRSGKTQLAHTLCVSTQLPTNMNGGNGKVAYIDTEGTLYPSCVDAILEFNENSRPDRIVPIAERFG MDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGVFI SDPKKPAGGHVLAHAATIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFYLTSLFNTLPFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Lus10039383 [exp]	0	1
AT1G71520	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041044 [exp]	1.4	0.9829
AT1G47670			Transmembrane amino acid trans...		Lus10022641 [exp]	5.1	0.9824
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10027220 [exp]	9.5	0.9716
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028377 [exp]	13.3	0.9802
					Lus10010257 [exp]	13.9	0.9798
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10027481 [exp]	18.2	0.9623
AT2G42360			RING/U-box superfamily protein...		Lus10002194 [exp]	18.5	0.9762
AT4G37290			unknown protein		Lus10010255 [exp]	18.6	0.9791
AT5G67550			unknown protein		Lus10025583 [exp]	20.8	0.9701
AT4G37290			unknown protein		Lus10019310 [exp]	21.2	0.9780

Compare expression of checked genes

Lus10039383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.