Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26850 936 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 837 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 686 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 667 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 666 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 655 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 545 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 490 / 2e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 480 / 1e-163 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 457 / 2e-154 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037180 [exp] 962 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10030479 [exp] 955 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10036747 [exp] 952 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 950 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10006626 [exp] 917 / 0 AT1G26850 702 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10008619 [exp] 868 / 0 AT1G26850 727 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10011045 [exp] 862 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003014 [exp] 859 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042197 [exp] 852 / 0 AT1G26850 706 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069000 [exp] 1033 / 0 AT1G26850 980 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.010G094100 [exp] 945 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.008G147800 [exp] 942 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.003G087600 [exp] 905 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 897 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 696 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 687 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 684 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 680 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 666 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10039385 pacid=23175593 polypeptide=Lus10039385 locus=Lus10039385.g ID=Lus10039385.BGIv1.0 annot-version=v1.0 ATGGCGACGAAAGGAAACTCAGGGGACACTAGAACTAGGAGCTCCATTTCAATATTCATTGTGGCCGGTTTATGTTTCTTCTTCTACATCTTGGGTGCGT GGCAGCGGAGTGGGTTTGGGAAGGGTGATACTATTGCTTTGGAGGTCACTAAACAGACAGACTGTAGCATTCTAACTAATCTCAACTACCAGACTAGTGC AGATTCTGGCATCATTGACGGGTCTGGATTAGATGTCAAGGAGATTCCACCGTGTGACGACATGTATATCGATTATACTCCCTGTCAAGATCAGACTAGG GCTATGACAATGCCCCGGGAGAACATGAACTACAGGGAACGACATTGTCCTCCTGAACCTGAGAAGCTGCATTGCCTTATCCCTGCACCAAAAGGCTATG CAACCCCTTTCTCGTGGCCCAAAAGTCGGGACTATGTGCCCTATGCAAACGCACCTTATAAGAGTTTGACAGTTGAAAAAGCTGTTCAGAACTGGATCAT ATATGAGGGGAACGTGTTTAGGTTTCCAGGGGGTGGAACACAGTTCCCCCATGGAGCAGATACCTATATCGATCAGCTTGCTTCAGCAATCCCGATCGAT AATGGGATGGTTAGAACTGCCTTGGATACTGGATGTGGAGTTGCTAGTTTGGGTGCATACCTTTTCAAGAAGAATGTCTTGACAATGTCATTTGCACCAA GAGACTCTCATGAAGCACAAGTTCAGTTTGCCCTTGAAAGAGGTGTGCCAGCTGTCATTGGTATTCTTGGAACTATCAAGATGCCATATCCTTCCGGAGC CTTTGACATGGCTCACTGTTCTCGTTGCCTGATTCCATGGGGTGGTAATGATGGAATGTACATGATGGAAGTCGATCGTGTTCTCAGACCAGGTGGTTAC TGGCTGCTTTCTGGTCCTCCCATCAACTGGAGGACTCATTATGAAGCATGGAATAGAACTAAAGAGAATCTTGAAGCAGAACAAAACAAGATTGAGGAAA TTGCCCGGCTTCTTTGCTGGGAAAAGAAAAATGAGTTGGGTGATATAGCTATCTGGCAAAAAAGATTGAATCCTGATTCTTGCAATGAGCAACGCACCAT GTGTGAATCCTCAAATCCTGATGATGTCTGGTACAAAAAAATGGAGCCCTGTGTAACTCGTACTCCAAAGACTGATGGATATGAATGGAAGCCATTTCCT GAAAGACTCAATGCCGTACCTTTCAGAATCACTAGTGGAGCTATTCCTGGAGTGTCTCCAGGGAAATTCCTGGAGGACAATAGGACCTGGAAGAAGCATG TGAATGCTTATAAGCGGATAAACAAGATTCTAGACACAGGGAGGTACCGAAACATTATGGACATGAATGCTGGTTTGGGAGGTTTTGCAGCAGCCCTTGA ATCTCCGAAACTATGGGTTATGAATGTTATGCCTACAATTGCTGAGAAGAACACATTGGGTGTTATCTATGAGCGTGGGTTGATCGGCATTTATCATGAT TGGTGTGAAGGTTTCTCTACGTATCCAAGAACTTATGACCTCATTCACGCAGATGGCATCTTCAGCTTGTACAAGGACAAGTGCAGCATGGAAGACATTC TCCTGGAAATGGACAGGATATTAAGGCCTGAAGGTACAGTCATATTCCGCGATCATGTGGATGTTCTTGTCAAAGTGAAGAGAACTGTGTCAGGGATGAG ATGGAATACGAAAATGGTTGACCACGAAGATGGTCCACTCGTTCCAGAGAAGGTGATGTTTGCTGTTAAACAATACTGGGTTGCAGGAGAACATAATGCC ACTTCGAATAATTAA
AA sequence Show only first row Show all	>Lus10039385 pacid=23175593 polypeptide=Lus10039385 locus=Lus10039385.g ID=Lus10039385.BGIv1.0 annot-version=v1.0 MATKGNSGDTRTRSSISIFIVAGLCFFFYILGAWQRSGFGKGDTIALEVTKQTDCSILTNLNYQTSADSGIIDGSGLDVKEIPPCDDMYIDYTPCQDQTR AMTMPRENMNYRERHCPPEPEKLHCLIPAPKGYATPFSWPKSRDYVPYANAPYKSLTVEKAVQNWIIYEGNVFRFPGGGTQFPHGADTYIDQLASAIPID NGMVRTALDTGCGVASLGAYLFKKNVLTMSFAPRDSHEAQVQFALERGVPAVIGILGTIKMPYPSGAFDMAHCSRCLIPWGGNDGMYMMEVDRVLRPGGY WLLSGPPINWRTHYEAWNRTKENLEAEQNKIEEIARLLCWEKKNELGDIAIWQKRLNPDSCNEQRTMCESSNPDDVWYKKMEPCVTRTPKTDGYEWKPFP ERLNAVPFRITSGAIPGVSPGKFLEDNRTWKKHVNAYKRINKILDTGRYRNIMDMNAGLGGFAAALESPKLWVMNVMPTIAEKNTLGVIYERGLIGIYHD WCEGFSTYPRTYDLIHADGIFSLYKDKCSMEDILLEMDRILRPEGTVIFRDHVDVLVKVKRTVSGMRWNTKMVDHEDGPLVPEKVMFAVKQYWVAGEHNA TSNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10039385 [exp]	0	1
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10035580 [exp]	5.4	0.8576
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10023546 [exp]	10.5	0.8483
AT1G77610			EamA-like transporter family p...		Lus10029663 [exp]	13.2	0.8405
AT2G01970			Endomembrane protein 70 protei...		Lus10031308 [exp]	13.9	0.8552
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10037795 [exp]	13.9	0.8548
AT1G04200			unknown protein		Lus10006619 [exp]	15.5	0.8372
AT5G47490			RGPR-related (.1)		Lus10008520 [exp]	15.5	0.8512
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002939 [exp]	15.9	0.8360
AT1G22610			C2 calcium/lipid-binding plant...		Lus10001538 [exp]	18.0	0.8187
AT5G47490			RGPR-related (.1)		Lus10004721 [exp]	18.7	0.8339

Compare expression of checked genes

Lus10039385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.