Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43810 1647 / 0 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT1G48410 1414 / 0 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT2G27880 1017 / 0 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G69440 585 / 0 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT5G21150 502 / 1e-164 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G27040 497 / 2e-162 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT2G32940 461 / 6e-149 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT5G21030 449 / 2e-144 PAZ domain-containing protein / piwi domain-containing protein (.1) AT1G31280 452 / 3e-144 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 431 / 3e-134 AGO3 ARGONAUTE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006627 [exp] 1814 / 0 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10031331 [exp] 1455 / 0 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10017983 [exp] 1415 / 0 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10041978 [exp] 1404 / 0 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031904 [exp] 1330 / 0 AT1G48410 1481 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10014386 [exp] 735 / 0 AT2G27880 773 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Lus10036794 [exp] 602 / 0 AT1G69440 1251 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10037136 [exp] 601 / 0 AT1G69440 1267 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036795 [exp] 598 / 0 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G158800 [exp] 1684 / 0 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.010G081300 [exp] 1668 / 0 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.015G029000 [exp] 1457 / 0 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.012G037100 [exp] 1451 / 0 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.009G001500 [exp] 1100 / 0 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.001G213700 [exp] 1084 / 0 AT2G27880 1214 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.006G118600 [exp] 1011 / 0 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.010G163800 [exp] 609 / 0 AT1G69440 1304 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Potri.008G010500 [exp] 513 / 2e-168 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.016G024200 [exp] 503 / 9e-165 AT2G27040 1246 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0219 [flax] [poplar] RNase_H PF02171 [flax] [poplar] Piwi Piwi domain CL0219 [flax] [poplar] PF08699 [flax] [poplar] ArgoL1 Argonaute linker 1 domain
Representative CDS sequence Show only first row Show all	>Lus10039386 pacid=23175544 polypeptide=Lus10039386 locus=Lus10039386.g ID=Lus10039386.BGIv1.0 annot-version=v1.0 ATGGTAACGGGTCAGTTAGCTTTTCCTACCTCTAGCAAGTCTATGGTTTTTGCTCAAAGGCCTGGCTTTGGTCAGCTTGGGACAAAGTGTGTTGTCAAGG CCAACCACTTCTTTGCAGAGTTGCCCAACAAAGATTTGAATCAGTATGATGTTACTATTACCCCGGAGGTTGCATCAAGGAGCATCAACAGAGCTATTAT GGCAGAGCTTGTGAAACGCCACAGAGAATCTGACTTAGGAATGAGACTTCCTGCTTACGATGGCAGAAAGAGTCTTTATACTGCTGGTGAACTTCCCTTT GCTTGGAAGGAGTTCACCATTAAACTTATTGATGACGAGGATGGTATCAATGGTCCCAGGAGGGAAAGAGAATTCAAAGTGGCTCTTAAGTTTGTTGCAA GGGCCAACATGTACCACTTGGGCCAATTTTTGGCTGGTAAACGTGCTGATGCTCCTCAAGAAGCTCTAAAAATCCTTGACATTGTGTTGAGAGAGCTCTC CACCAAAAGGTACTGTCCCGTAGGAAGATCCTTCTTTTCACCTGATATTAGAGCGCCACAAAGATTGGGTGAGGGCTTGGAGTCGTGGTGTGGATTTTAT CAGAGTATAAGGCCCACCCAAATGGGACTTTCGCTGAATATTGATATGGCTTCTGCTGCATTTATTGAGCCTCTTCCCGTGGTTGAGTACGTAGCTCAGC TTCTTGGTAAAGATGTGTTGTCAAGGCCATTGTCTGATTCCGACCGTGTGAAGATTAAAAAGGCTTTTAGAGGGGTAAAAGTTGAAGTAACTCATAGAGG GAATGTACGACGGAAGTATCGCGTCTCAGGATTAACAGCTCAACCCACAAGAGAGCTTGTGTTCCCTGTTGATGAAAACGCGACCATGAAATCAGTGGTT GAGTATTTCCAAGAGATGTATGGCTTCACCATTCAACATACACACCTCCCCTGCCTTACAGTGGGAAACCAGAAGAAGGCAAACTACCTTCCCATGGAGG CATGCAAAATTGTGGAGGGGCAGCGGTACTCGAAAAGGTTGAATGAGAAACAGATTACCGCCCTGCTTAAAGTTACATGTCAAAGGCCTAGGGATCGGGA AAATGACATTTTGCAGACAGTTCAACAAAATGCCTATGATCAAGACCCTTATGCAAAAGAGTTTGGACTTAATATAAGTGAAAAGCTAGCATCTGTCGAG GCTAGAATTCTTCCTGCTCCATGGCTGAAATACCACGAAACAGGAAAGGAAAAGGACTGTTTACCTCAAGTTGGTCAATGGAATATGATGAACAAGAAAA TGATTAATGGAATGACTGTAAATCGATGGGCTTGTATTAACTTCTCAAGGAGTGTGCAAGAAAGTGTTGCTCGTGGATTTTGTAGCGAACTTGGTCAAAT GTGCCAAGTCTCTGGCATGGAATTCAATCCAGACCCTGTCATTCCTATATACAATGCTAGGCCTGATCAAGTAGAAAAAGCCTTGAAGCATGTTTGCAAT GCATCAATGAACAAATCCAAGGGGAAAGAACTGGAGCTGCTTTTAGCCATTCTGCCGGACAACAACGGTTCCTTGTATGGTGATCTCAAGCGCATATGTG AAACTGATCTTGGTATAATCTCGCAATGCTGTCTCACAAAGCATGTATTCAAGATAAGCAAGCAGTACTTGGCTAATGTTTCCTTAAAGATCAATGTCAA GATGGGTGGAAGAAACACTGTCCTGTTAGATGCCATCAGCTGCAAAATACCATTAGTGAGTGACATACCAACCATAATATTTGGTGCAGATGTGACTCAC CCAGAGAACGGCGAGGATTCAAGCCCTTCAATTGCAGCAGTGGTAGCTTCTCAGGACTGGCCCGAGGTCACAAAATATGCTGGACTAGTCTGTGCTCAAG CTCACAGGCAAGAACTCATCCAAGATCTTTATAAAACATGGCAAGATCCTATCCGTGGTACCATGAGTGGCGGCATGATCAGAGATCTTCTCATTTCCTT TAGGAAGGCAACAGGACAGAAACCGCTACGAATAATATTCTACAGAGATGGAGTTAGTGAAGGACAATTTTATCAGGTCTTGCTTTACGAGTTGGATGCA ATCCGGAAGGCATGCGCTTCCCTAGAGCCAAACTATCAACCACTAGTGACTTTCATTGTTGTACAAAAACGGCATCACACTCGATTGTTTGCAAACAATC ACAGGGACAGGAGCAGCACAGACAAAAGTGGGAATGTACTGCCTGGCACAGTCGTGGATACAAAAATCTGTCACCCAAGCGAATTTGACTTTTATTTGTG TAGTCACGCTGGGATCCAGGGGACTAGCCGGCCGGCTCACTACCATGTGCTATGGGATGAGAATAACTTCACAGCTGATGGAATCCAATCGTTAACAAAC AATCTGTGTTATACCTATGCAAGATGCACCCGTTCTGTATCTGTTGTTCCACCGGCGTATTATGCACATCTGGCCGCCTTCCGTGCCCGGTTCTACCTGG AACCACAGATGCAAGATAATGGATCATCGACAGGTGGCAAGGATACACGGCTTCTGGGAGAAGCTGGTGTTCGACCATTGCCAGCGTTGAAGGAGAATGT GAAAAGGGTGATGTTCTACTGTTGA
AA sequence Show only first row Show all	>Lus10039386 pacid=23175544 polypeptide=Lus10039386 locus=Lus10039386.g ID=Lus10039386.BGIv1.0 annot-version=v1.0 MVTGQLAFPTSSKSMVFAQRPGFGQLGTKCVVKANHFFAELPNKDLNQYDVTITPEVASRSINRAIMAELVKRHRESDLGMRLPAYDGRKSLYTAGELPF AWKEFTIKLIDDEDGINGPRREREFKVALKFVARANMYHLGQFLAGKRADAPQEALKILDIVLRELSTKRYCPVGRSFFSPDIRAPQRLGEGLESWCGFY QSIRPTQMGLSLNIDMASAAFIEPLPVVEYVAQLLGKDVLSRPLSDSDRVKIKKAFRGVKVEVTHRGNVRRKYRVSGLTAQPTRELVFPVDENATMKSVV EYFQEMYGFTIQHTHLPCLTVGNQKKANYLPMEACKIVEGQRYSKRLNEKQITALLKVTCQRPRDRENDILQTVQQNAYDQDPYAKEFGLNISEKLASVE ARILPAPWLKYHETGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQESVARGFCSELGQMCQVSGMEFNPDPVIPIYNARPDQVEKALKHVCN ASMNKSKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCKIPLVSDIPTIIFGADVTH PENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPIRGTMSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDA IRKACASLEPNYQPLVTFIVVQKRHHTRLFANNHRDRSSTDKSGNVLPGTVVDTKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTN NLCYTYARCTRSVSVVPPAYYAHLAAFRARFYLEPQMQDNGSSTGGKDTRLLGEAGVRPLPALKENVKRVMFYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10039386 [exp]	0	1
					Lus10039387 [exp]	1.0	0.9644
AT2G46380			Protein of unknown function (D...		Lus10005153 [exp]	2.0	0.9123
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10036794 [exp]	4.2	0.8938
AT3G61670			Protein of unknown function (D...		Lus10003040 [exp]	4.5	0.8962
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10036795 [exp]	4.6	0.8916
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	6.5	0.8987
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10021034 [exp]	7.5	0.8905
AT5G62960			unknown protein		Lus10042109 [exp]	8.3	0.8626
AT3G48970			Heavy metal transport/detoxifi...		Lus10027470 [exp]	9.0	0.8842
AT1G28390			Protein kinase superfamily pro...		Lus10018542 [exp]	9.5	0.8711

Compare expression of checked genes

Lus10039386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.