Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006627 [exp] 100 / 9e-26 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G081300 [exp] 54 / 9e-10 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.008G158800 [exp] 54 / 2e-09 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039387 pacid=23175447 polypeptide=Lus10039387 locus=Lus10039387.g ID=Lus10039387.BGIv1.0 annot-version=v1.0 ATGCCTATAGGGCAGCTGAAAGAAAGCTCGGCGCAGCACTTAGTGATCAAACCCCAGATTCAGAACAACAACACAGCAAACAGGCCTAGGAAACACCACA AGACTGCTGCACAGAATGGGAAAGGGACAGCACCACAACCACCATCATCCCAAGAAACACATAATGCTGCTAAACCTCAAAACCAGAATCAGAATCAGAG TCAGACCTCGTCAGCCTCGCCTCCTGTCGGAAAGAGCAAAGGCAGAAGGAGAGGGAGAGGTGGCCGGAAATCTGATCAAGCTGATGAGTGGGGTGTCCCT GCCAAGTGGGTCACTTGA
AA sequence Show only first row Show all	>Lus10039387 pacid=23175447 polypeptide=Lus10039387 locus=Lus10039387.g ID=Lus10039387.BGIv1.0 annot-version=v1.0 MPIGQLKESSAQHLVIKPQIQNNNTANRPRKHHKTAAQNGKGTAPQPPSSQETHNAAKPQNQNQNQSQTSSASPPVGKSKGRRRGRGGRKSDQADEWGVP AKWVT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039387 [exp]	0	1
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10039386 [exp]	1.0	0.9644
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10036795 [exp]	2.0	0.9281
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10036794 [exp]	2.4	0.9259
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	4.9	0.9182
AT2G19090			Protein of unknown function (D...		Lus10020008 [exp]	5.5	0.8920
AT2G46380			Protein of unknown function (D...		Lus10005153 [exp]	5.9	0.8983
AT2G01210			Leucine-rich repeat protein ki...		Lus10043480 [exp]	8.1	0.8798
AT3G61670			Protein of unknown function (D...		Lus10003040 [exp]	9.9	0.8780
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	11.0	0.8954
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024773 [exp]	11.0	0.8583

Compare expression of checked genes

Lus10039387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.