Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43790 474 / 3e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 457 / 6e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G48910 444 / 9e-149 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 441 / 6e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 436 / 7e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 424 / 3e-142 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 418 / 5e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 415 / 5e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33760 412 / 2e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G31920 405 / 1e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000117 [exp] 766 / 0 AT4G21065 404 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10006628 [exp] 711 / 0 AT4G21065 399 / 7e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10029344 [exp] 441 / 3e-148 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031423 [exp] 442 / 4e-148 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 441 / 1e-147 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 436 / 5e-146 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 435 / 9e-146 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 435 / 1e-145 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 435 / 2e-145 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065500 [exp] 460 / 1e-155 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G135400 [exp] 454 / 3e-153 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 444 / 3e-149 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G012600 [exp] 439 / 9e-147 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 426 / 3e-144 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G105700 [exp] 432 / 1e-143 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 431 / 1e-142 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G191200 [exp] 426 / 4e-142 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 426 / 4e-142 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 423 / 2e-141 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039388 pacid=23175604 polypeptide=Lus10039388 locus=Lus10039388.g ID=Lus10039388.BGIv1.0 annot-version=v1.0 ATGAAATCACTAAGCGTCACCACATTATCCGCTCATCCTACTCTCCAACTCCTGGAAAGATGCAACACCTTCGCAACTCTAAGGCAAGTCCATGCTCAAT TGCTCGTGACAGGCCTTGCTCTTCACACTTACCCTCTCAGCCGACTTCTCTTCGTTTCCTCTGTTTCCTCTCCCCAACACACTCTCCGCGTCTTTAATCA GATACCCGATCCCACGATTTTCCTCTTCAACACCGTCATTTCTTGTTTCTCCAATCGTACAAGTTGGACTCATCTTGCCTTTTCTCTATACCATCGTGCT CTTCTGTCTTACCCCAATGTCACTCCCAATAGCTTCACTTTCCCATCGCTATTCAAAGCTTGTGGGTTTCACCCGTGGGTTCCCTATGGCCTAGCTCTTC ATACCCATGCTTTGAAATTCCTTGAACCGCCCTATGACCAGTTTGTTCAAGCCTCGTTGCTGAATTACTACGCTAATTGTGGGAAGCTGAATGCGGCCAG ACGACTGTTTGATCGAATTCGTCAACCTGATTTGGCCTCTTGGAACTCGATTTTAGCTGCTTATGCGCGAAGAGCTACGGAAACCAATGATCGAACTGAT ATCTCATTGGAGACTTTACATCTGTTCCATGAGATGCTGAAGAATTCTTCTGTTAGGCCGAATGAAGTTACGCTTGTGGCTGTGATTAGTGCTTGTTCTA ATTTGGGTGCTCTCAGTCAAGGTGCTTGGGCACATTTGCTTGTGCTGAAGACCGGTCTCAAGCTAAATCGTTTTGTGGGCACTGCTTTAGTGGAATTGTA TTCTAAAAGTGGGCGAGTGGATCTTGCACGCCAGGTGTTTGATCAATTGCCTCATAGGGATATACTTTGCTACAATGCGATGATTGGTGGCTTGGCAATT CATGGTTATGGCTTGCAGGCTCTTGGCTTATACGAGAAAATGGAGCTTGAGTGCCTTACTCCTGATTCTGTGACGTTCATTGTTGCAATGAGTGCTTGCT CACATAGCGGGTTAGTAGAGCAGGGCCGTGAGATTTTCGAGTCTATAGAAGAAGTTCATGGGATTGAACCAACAGTTGAGCACTATGGATGTGTAGTTGA TCTTCTGATTCGTGCAGGCCGACTTAAAGAGGCTGAGGAAAAGGTTGGAACCATGCCAATGAAGCCTAATGCAGCTATATGGAGGTCACTACTAGGTGGA GCTAGGATTCATGGAGACTTACAGTTAGGTGAAACGGCACTTAAACAGCTTGTGCAATTGGAGCCAGAGAAAAGTGGGAGTTACGTTCTTTTGTCAAACA TGTATGCCTCCACCCACAAATGGGAAGAAGTGAAGAGAGTTAGAGAAGTAATGAAAGAGGAAGGGATCGTCAAATTTCCAGGCAGCTCCATGGTGGAGAT CGGCGGAGCTATGCACGAGTTCATAAGTGGAGACAGAACTCACCCACGTTCTAGTGACATCTACGCCAAGGTTGAGGAGATGAGCACCAAGTTGCAGGAA CATGGCCACAGCCCAAGAACAAGGGAAGTATTGTTTGACATAGAGGATGAAGAGAAAGAAGATGCTCTTTCGTACCACAGCGAAAGGCTGGCGATTGCAT TTGCTCTGTTGGTGGCTGCAGATTTGGACAACGTCCATGCTCCCGTACGAATAATAAAGAACCTTCGGGTTTGTGGGGATTGCCACGACAGTTTTAAGCT GATTTCTTTGATTTACAAGAGAGAAATTATAGTGAGGGATCGAAGTAGGTTTCATCATTTCAGAGATGGGAGATGTTCTTGTTTGGATTACTGGTAA
AA sequence Show only first row Show all	>Lus10039388 pacid=23175604 polypeptide=Lus10039388 locus=Lus10039388.g ID=Lus10039388.BGIv1.0 annot-version=v1.0 MKSLSVTTLSAHPTLQLLERCNTFATLRQVHAQLLVTGLALHTYPLSRLLFVSSVSSPQHTLRVFNQIPDPTIFLFNTVISCFSNRTSWTHLAFSLYHRA LLSYPNVTPNSFTFPSLFKACGFHPWVPYGLALHTHALKFLEPPYDQFVQASLLNYYANCGKLNAARRLFDRIRQPDLASWNSILAAYARRATETNDRTD ISLETLHLFHEMLKNSSVRPNEVTLVAVISACSNLGALSQGAWAHLLVLKTGLKLNRFVGTALVELYSKSGRVDLARQVFDQLPHRDILCYNAMIGGLAI HGYGLQALGLYEKMELECLTPDSVTFIVAMSACSHSGLVEQGREIFESIEEVHGIEPTVEHYGCVVDLLIRAGRLKEAEEKVGTMPMKPNAAIWRSLLGG ARIHGDLQLGETALKQLVQLEPEKSGSYVLLSNMYASTHKWEEVKRVREVMKEEGIVKFPGSSMVEIGGAMHEFISGDRTHPRSSDIYAKVEEMSTKLQE HGHSPRTREVLFDIEDEEKEDALSYHSERLAIAFALLVAADLDNVHAPVRIIKNLRVCGDCHDSFKLISLIYKREIIVRDRSRFHHFRDGRCSCLDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43790			Pentatricopeptide repeat (PPR)...		Lus10039388 [exp]	0	1
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10000117 [exp]	1.0	0.9623
AT2G36980			Tetratricopeptide repeat (TPR)...		Lus10033982 [exp]	1.4	0.9303
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10021355 [exp]	5.2	0.9246
AT3G53630			unknown protein		Lus10003983 [exp]	6.9	0.9199
AT2G03880		REME1	required for efficiency of mit...		Lus10001617 [exp]	7.9	0.9061
AT5G25500			unknown protein		Lus10002897 [exp]	8.4	0.9050
AT4G24830			arginosuccinate synthase famil...		Lus10030725 [exp]	15.6	0.8567
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014431 [exp]	17.0	0.9180
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10022844 [exp]	17.1	0.8912
AT3G53630			unknown protein		Lus10023752 [exp]	17.4	0.9119

Compare expression of checked genes

Lus10039388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.