Plant FIBer expression Database

Lus10039389 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G22890 654 / 0 APS1 ATP sulfurylase 1 (.1)
AT4G14680 647 / 0 APS3 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
AT5G43780 610 / 0 APS4 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
AT1G19920 555 / 0 ASA1, APS2 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006629
[exp]
816 / 0 AT3G22890 769 / 0.0 ATP sulfurylase 1 (.1)
Lus10034513
[exp]
555 / 0 AT1G19920 744 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Lus10033158
[exp]
554 / 0 AT1G19920 736 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G159000
[exp]
708 / 0 AT3G22890 767 / 0.0 ATP sulfurylase 1 (.1)
Potri.010G081200
[exp]
702 / 0 AT3G22890 758 / 0.0 ATP sulfurylase 1 (.1)
Potri.002G024200
[exp]
538 / 0 AT1G19920 758 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Potri.005G237300
[exp]
526 / 0 AT1G19920 734 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF01747 ATP-sulfurylase ATP-sulfurylase
Representative CDS sequence
>Lus10039389 pacid=23175605 polypeptide=Lus10039389 locus=Lus10039389.g ID=Lus10039389.BGIv1.0 annot-version=v1.0
ATGGCGTCAATGTCGACTCTTTTCGCTCAAACTCACTGCCCTATCCGCTTCCTTCCCAAATCATTCACCACCCAGCTGGCTCCACCCGTCAAAGTTTCCT
TCTCGGCCAAAACCCGGAGCAGCAAGGCTGGCCGGGTCAGGGCTGGGTTGATCGACCCGGACGGTGGAAAGCTGGTGGAGCTATTCGTCGACAAGACCCA
GAGGGATGTCCGACGGAATGAGGCGACTGCTCTGCCGAAGGTGAAGCTTACGAGCATCGACGTTCAGTGGGTCCACGTGCTGAGCGAAGGTTGGGCAAGT
CCCCTACGCGGGTTCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTCAACTCGCTCCGTCTCCAAGGCGGATCGGTTGTAAACATGTCGGTACCCA
TCGTACTGGCAATCGACGATCTGCAGAAGCAGCGCATCGCCGAATCCAATAGGGTCGCCCTTGTTGACTCTAACGACAACACTATCGCAATCCTCAACGA
CATTGAGATATACAAGCACCCTAAGGAAGAAAGGATAGCAAGAACATGGGGAACCACTGCTCCTGGTTTACCATACGTTGAGGAAGCCATTACCGGTTCA
GGGAACTGGCTGATTGGAGGTGATCTAGAGGTTATAGAGCCAATTAAGTACCATGATGGCCTCGATAGATTTCGGTTGTCACCAGCTGAGCTCCGTGAGG
AATTCGAGAGGAGGAATGCAGATGCTGTGTTTGCATTCCAGCTGAGGAACCCTGTGCACAATGGCCATGCTTTGCTGATGACCGATACTCGTAAGAGGCT
ACTTGACATGGGTTATAAGAACCCTGTTCTTTTGCTCCATCCACTTGGCGGCTACACCAAGGCTGATGATGTTCCGCTCACTTGGCGGATGAAGCAACAT
GAAAAGGTACTTGAGGATGGTGTTCTTGATCCCGAGACAACTGTGGTTTCGATATTCCCATCCCCTGACCACGGAAAGAAGGTGTTGAGTATGGCTCCCG
GACTCGAGCGCCTGAATATCCTTCCTTTCAAGGTTGCTGCGTATGACAAGACACAGGGTAAAATGGCATTCTTTGACCCCTCAAGGGCTCAGGACTTCGT
CTTCATATCTGGCACCAAGATGAGAGCGCTTGCAAAGAGCGGAGAGAACCCTCCTGATGGATTCATGTGCCCCGGAGGGTGGAAAGTTCTGGTCGAATAC
TACGACAGCCTGAACCCAGCACCGAATGGCAAGGTTCCTGAACCAGTTCCAGCCTAG
AA sequence
>Lus10039389 pacid=23175605 polypeptide=Lus10039389 locus=Lus10039389.g ID=Lus10039389.BGIv1.0 annot-version=v1.0
MASMSTLFAQTHCPIRFLPKSFTTQLAPPVKVSFSAKTRSSKAGRVRAGLIDPDGGKLVELFVDKTQRDVRRNEATALPKVKLTSIDVQWVHVLSEGWAS
PLRGFMRESEFLQTLHFNSLRLQGGSVVNMSVPIVLAIDDLQKQRIAESNRVALVDSNDNTIAILNDIEIYKHPKEERIARTWGTTAPGLPYVEEAITGS
GNWLIGGDLEVIEPIKYHDGLDRFRLSPAELREEFERRNADAVFAFQLRNPVHNGHALLMTDTRKRLLDMGYKNPVLLLHPLGGYTKADDVPLTWRMKQH
EKVLEDGVLDPETTVVSIFPSPDHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFFDPSRAQDFVFISGTKMRALAKSGENPPDGFMCPGGWKVLVEY
YDSLNPAPNGKVPEPVPA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G14680 APS3 Pseudouridine synthase/archaeo... Lus10039389
[exp]
0 1
AT3G22890 APS1 ATP sulfurylase 1 (.1) Lus10006629
[exp]
1.7 0.9386
AT1G73880 UGT89B1 UDP-glucosyl transferase 89B1 ... Lus10013500
[exp]
2.8 0.9291
AT2G30140 UDP-Glycosyltransferase superf... Lus10042261
[exp]
5.9 0.9400
AT4G27290 S-locus lectin protein kinase ... Lus10038552
[exp]
8.8 0.9387
AT4G37990 CAD-B2, ATCAD8,... CINNAMYL-ALCOHOL DEHYDROGENASE... Lus10025706
[exp]
11.0 0.9379
AT5G65380 MATE efflux family protein (.1... Lus10002645
[exp]
11.2 0.9352
AT3G13110 SAT-M, SAT-A, S... SERINE ACETYLTRANSFERASE 3, SE... Lus10016603
[exp]
14.8 0.8860
AT5G23160 unknown protein Lus10017395
[exp]
20.0 0.9311
AT3G51520 diacylglycerol acyltransferase... Lus10039135
[exp]
20.5 0.9300
AT1G73730 EIL AtEIL3, ATSLIM,... ARABIDOPSIS THALIANA SULFUR LI... Lus10031817
[exp]
20.9 0.8535

Lus10039389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.