Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006631 [exp] 586 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G159200 [exp] 91 / 1e-18 AT4G14650 56 / 9e-08 unknown protein Potri.010G081000 [exp] 83 / 3e-16 AT4G14650 55 / 2e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039390 pacid=23175584 polypeptide=Lus10039390 locus=Lus10039390.g ID=Lus10039390.BGIv1.0 annot-version=v1.0 ATGGGGAACAGTAACACCTCTGGGTTTCAAGATGCAGCAGAAGAAAATTCTAACACAAAGATTGAAGGAACTCAACCAAAATCTGTGCAAGAACATGATG AGCAAGAAGGTACAAGAGGACACTTTGTTGATCAAAGTGAAGGAAGTGATGAAAATGGAGGAAGAATGTTAGGTTCTGAGGATCCAAAGGAAGAGGAGGG AGCAAAAGCCCGGAATCGAGATGGAAAAGTTGTTTCAGAGCAAGAGAATGATAGGCTGGAGAGCCAAGTTCATGATCTTATGTCTGTCGAATCTGAGGAA CCAAAGCCCGAATATGAAGAAGAAAGAAGTAAAGACAGTAATCCTCAACTAAATATTGTGAGGCAACAAACAGAAGAAAACAAGTCTGATTCTATGGAAC AACCAGAATCTAGTAAGCCAGCAGAGGAGGTGGAGGAGACGTTGAGCTCAGGTTCAACTGTTAGATCCCATGCACATGATGAGCAAGAACATCAAGGTTC TGATGAAGTAGAATCAAACCTGACTGAAAACCAAGGTAACTCAACTTCCACCAATATGGAGAGGTTGGAGAGCCAAGTTCACGATCCTTTGCTAGCCGAA TCTAAGAAGCCAAACCTGGACTACAATGGAGATAGCAGCAAATGTGGCAATTCTCAACCGAATTTATTGAGGGAAGAGATGGAAGAACGCATATCTGATG TAGATGAGCAGCAGGAACTGCATAAGCCAGTGGAGGCAGAGATGAGCATAGGATCACCTGTTATGCCCCCTTCACACGATGGGCTACAAAATCATGGCGC CGATGAAGCAGAATTGAAACAGAACGAGAATGAAGGCAACTCAACGTCCACCATTATGTCCCCTTCAATCAATGAAGAAGTTCCGAATTCTGAAGAACTG GAATTGAACCTGAATAAAGATGAAGGCAGCATAACAAAATCACCATTTGCTCATACTACTGATTCTGAGAATAATCAGCATTTTGATGTTCATACATCTT ATGCTCATGATGAATCTGTCATAGCTGAGAATCTCATGGATGGGTTTTCGGTGAATGAACTGATCATATCTTTACCCAATGGAAAAGAAGAATTGTTGCA AGAGTCGTCACCTGACCAAGAGAAAGTGTCTGCAACGGAGTCTGAAGATTCTCCACAAGACATCAGTAGCAACTCCAACTGGGAATTCAACACAGGAAAC AGCTCCGATTTCTTTGTCGATATGACTCCAACTTTCATCGCCGATAAGTTGACTGGTGAGGAAGAGCCTGTTCCATTTCCAATCCAGCTTCCGGCAGCAG TTACGGTGAGAAAGGAAGAGACCGACCAGCAATTGGGAAGACTGAGCACCGACTCAGCTCCCGAAAACTTGACCGCCGATTCCCATATGCAGAAATCCCC GAGCTTCAATTTTGATCTTCATCTTCGGCGACGCAGCACCGAAGAGTACTCCGATCAAACTCCTCTCCTCCAGAAATACCAAGACAAGAACACGATCACA TCTATATCTAAAGAAACTAAGGCTTTTGAAATGCCCAGTCACGAAGAGGCGATGTCAGTGGAAGAGAAAGCCAGTCAACCCCTAGAGAAGAGTGATTCAG AGAAGCCGTTGATCCTAGGGTGGATGAAGGAAGACAATAATAATGAAGTCCATCGCCAAAAGAAAGCATCGGAAGAGGAAATGACGAAATGGGTTCCGTC TGAAGAGAAAGAAAAGCAGTACAGCCGGCGCCGATCGACAATCTTCAGCAACTGTCTGTGCTGCACGGCAACAAACGCCATCAGTTAA
AA sequence Show only first row Show all	>Lus10039390 pacid=23175584 polypeptide=Lus10039390 locus=Lus10039390.g ID=Lus10039390.BGIv1.0 annot-version=v1.0 MGNSNTSGFQDAAEENSNTKIEGTQPKSVQEHDEQEGTRGHFVDQSEGSDENGGRMLGSEDPKEEEGAKARNRDGKVVSEQENDRLESQVHDLMSVESEE PKPEYEEERSKDSNPQLNIVRQQTEENKSDSMEQPESSKPAEEVEETLSSGSTVRSHAHDEQEHQGSDEVESNLTENQGNSTSTNMERLESQVHDPLLAE SKKPNLDYNGDSSKCGNSQPNLLREEMEERISDVDEQQELHKPVEAEMSIGSPVMPPSHDGLQNHGADEAELKQNENEGNSTSTIMSPSINEEVPNSEEL ELNLNKDEGSITKSPFAHTTDSENNQHFDVHTSYAHDESVIAENLMDGFSVNELIISLPNGKEELLQESSPDQEKVSATESEDSPQDISSNSNWEFNTGN SSDFFVDMTPTFIADKLTGEEEPVPFPIQLPAAVTVRKEETDQQLGRLSTDSAPENLTADSHMQKSPSFNFDLHLRRRSTEEYSDQTPLLQKYQDKNTIT SISKETKAFEMPSHEEAMSVEEKASQPLEKSDSEKPLILGWMKEDNNNEVHRQKKASEEEMTKWVPSEEKEKQYSRRRSTIFSNCLCCTATNAIS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039390 [exp]	0	1
AT4G18340			Glycosyl hydrolase superfamily...		Lus10023309 [exp]	1.7	0.8233
AT3G59680			unknown protein		Lus10027060 [exp]	4.2	0.7550
					Lus10006631 [exp]	5.7	0.7800
					Lus10015658 [exp]	9.1	0.8068
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10042774 [exp]	9.2	0.7732
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10033082 [exp]	9.2	0.7927
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10039869 [exp]	9.2	0.7563
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011722 [exp]	10.2	0.7982
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Lus10032316 [exp]	11.1	0.8046
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	11.4	0.7703

Compare expression of checked genes

Lus10039390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.