Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14640 268 / 1e-93 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT3G22930 261 / 7e-91 CML11 calmodulin-like 11 (.1) AT2G27030 243 / 2e-83 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G56800 241 / 3e-83 ACAM-3, CAM3 calmodulin 3 (.1) AT2G41110 241 / 3e-83 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT3G43810 240 / 6e-83 CAM7 calmodulin 7 (.1) AT5G21274 239 / 2e-82 ACAM-6, CAM6 calmodulin 6 (.1) AT5G37780 239 / 3e-82 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 239 / 3e-82 ACAM-4, CAM4 calmodulin 4 (.1.2) AT2G41090 150 / 1e-46 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041288 [exp] 240 / 7e-83 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 240 / 7e-83 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 240 / 7e-83 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 240 / 7e-83 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10022589 [exp] 204 / 4e-68 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10021487 [exp] 199 / 2e-66 AT2G41110 255 / 1e-88 calmodulin 2 (.1.2) Lus10001775 [exp] 197 / 1e-65 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10041179 [exp] 191 / 8e-64 AT4G14640 174 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10009176 [exp] 186 / 5e-61 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G080900 [exp] 279 / 3e-98 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 273 / 1e-95 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.012G041000 [exp] 242 / 1e-83 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.001G222200 [exp] 243 / 3e-83 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.015G032600 [exp] 241 / 5e-83 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.006G026700 [exp] 240 / 6e-83 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 240 / 6e-83 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.016G024700 [exp] 240 / 6e-83 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.005G052800 [exp] 234 / 2e-80 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1) Potri.013G040300 [exp] 216 / 3e-73 AT3G22930 210 / 1e-70 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10039391 pacid=23175569 polypeptide=Lus10039391 locus=Lus10039391.g ID=Lus10039391.BGIv1.0 annot-version=v1.0 ATGGCAATGGCAGAAGGGCTTACCCAGGACCAGATTGTTGAGTTTAAGGAAGCTTTCTGCCTCTTTGACAAGGATGGAGATGGTTGCATCACCATCGAGG AACTGGCGACAGTAATCCGGTCATTGGATCAGAACCCAACCGAGCAAGAGCTCCACGACATGATTACAGAGGTTGATGCGGACGGCAACGGCACTATTGA GTTTGCCGAGTTCTTGAGCCTCATGGCCAGAAAAATCAAGGAGACTGATGCAGAGGAGGAGCTTAAAGAGGCGTTCAAAGTGTTCGACAAGGATCAGAAT GGCTACATTTCAGCTACTGAGTTGAGGCATGTCATGATCAACTTAGGAGAGAAACTGACCGATGAAGAGGTGGAGCAGATGATTAAGGAGGCAGATTTGG ACGGCGACGGTCAAGTTAACTACGATGAATTCGTTAAGATGATGTCTACCGTCGGATGA
AA sequence Show only first row Show all	>Lus10039391 pacid=23175569 polypeptide=Lus10039391 locus=Lus10039391.g ID=Lus10039391.BGIv1.0 annot-version=v1.0 MAMAEGLTQDQIVEFKEAFCLFDKDGDGCITIEELATVIRSLDQNPTEQELHDMITEVDADGNGTIEFAEFLSLMARKIKETDAEEELKEAFKVFDKDQN GYISATELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYDEFVKMMSTVG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10039391 [exp]	0	1
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	4.0	0.9395
AT3G16565			alanine-tRNA ligases;nucleic a...		Lus10000503 [exp]	4.9	0.9229
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	9.6	0.9261
AT1G16670			Protein kinase superfamily pro...		Lus10026503 [exp]	10.7	0.9238
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	12.8	0.9251
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	14.6	0.9260
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10007757 [exp]	16.5	0.9143
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10038048 [exp]	18.8	0.9048
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	19.7	0.9132
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	20.3	0.9192

Compare expression of checked genes

Lus10039391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.