Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22950 355 / 2e-127 ATARFC1 ADP-ribosylation factor C1 (.1.2) AT1G70490 212 / 1e-70 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 212 / 1e-70 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT1G10630 210 / 6e-70 ATARFA1F ADP-ribosylation factor A1F (.1) AT3G62290 209 / 1e-69 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT2G47170 209 / 2e-69 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT5G14670 207 / 8e-69 ATARFA1B ADP-ribosylation factor A1B (.1) AT2G24765 193 / 2e-63 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT5G17060 189 / 2e-61 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 187 / 7e-61 ATARFB1C ADP-ribosylation factor B1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006632 [exp] 380 / 5e-137 AT3G22950 358 / 2e-128 ADP-ribosylation factor C1 (.1.2) Lus10030884 [exp] 208 / 7e-69 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 208 / 1e-68 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10013021 [exp] 209 / 3e-68 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10031436 [exp] 206 / 3e-68 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 209 / 9e-66 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10030605 [exp] 208 / 2e-62 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10009571 [exp] 189 / 2e-61 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10002817 [exp] 187 / 5e-61 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142600 [exp] 359 / 7e-129 AT3G22950 351 / 1e-125 ADP-ribosylation factor C1 (.1.2) Potri.012G139900 [exp] 358 / 1e-128 AT3G22950 349 / 6e-125 ADP-ribosylation factor C1 (.1.2) Potri.005G142100 [exp] 211 / 2e-70 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 210 / 6e-70 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 210 / 6e-70 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 210 / 7e-70 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 210 / 7e-70 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 210 / 7e-70 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 209 / 9e-70 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 209 / 1e-69 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10039392 pacid=23175450 polypeptide=Lus10039392 locus=Lus10039392.g ID=Lus10039392.BGIv1.0 annot-version=v1.0 ATGGGAGCATTCATGTCTAGATTTTGGTTCATGATGTTTCCAGCTAAGGAGTACAAGATTGTGGTGGTTGGATTGGATAATGCAGGGAAGACCACCACTC TTTACAAATTACACTTGGGAGAGGTCGTGACTACTCACCCTACTGTTGGTAGTAATGTGGAAGAAGTTGTCTACAAGAACATTCGTTTTGAGGTGTGGGA CCTTGGAGGACAAGAGAGGCTGAGGACATCATGGGCAACGTATTACAGAGGAACGCATGCCATAATAGTAGTGATAGACAGCACGGATAGAGCAAGGATA TCGATAATGAAGGATGAACTTTTTAGACTGATTGGGCATGACGAATTGCAGCAGTCGGTTGTACTGGTATTTGCAAACAAACAAGATCTAAAGGACGCCA TGACTCCTGCTGAGATAACTGATGCACTTTCACTCCACATCATAAAAAATCACGACTGGCACATCCAGGCATGTTGCGCACTCACTGGTGAAGGTTTGTA CGACGGCCTTGGATGGATTGCTCAGCGTGTTACTGGCAAAGCCCCAAGTTAG
AA sequence Show only first row Show all	>Lus10039392 pacid=23175450 polypeptide=Lus10039392 locus=Lus10039392.g ID=Lus10039392.BGIv1.0 annot-version=v1.0 MGAFMSRFWFMMFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEEVVYKNIRFEVWDLGGQERLRTSWATYYRGTHAIIVVIDSTDRARI SIMKDELFRLIGHDELQQSVVLVFANKQDLKDAMTPAEITDALSLHIIKNHDWHIQACCALTGEGLYDGLGWIAQRVTGKAPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Lus10039392 [exp]	0	1
AT3G08890			Protein of unknown function, D...		Lus10002862 [exp]	1.7	0.8499
AT4G25150			HAD superfamily, subfamily III...		Lus10013478 [exp]	3.2	0.8187
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	9.3	0.8381
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10043394 [exp]	9.4	0.8109
AT2G43760			molybdopterin biosynthesis Moa...		Lus10026805 [exp]	12.2	0.8237
AT4G08230			glycine-rich protein (.1.2)		Lus10024100 [exp]	14.3	0.8157
AT5G03460			unknown protein		Lus10014419 [exp]	17.0	0.8268
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10022525 [exp]	17.9	0.8116
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10002725 [exp]	18.0	0.7938
AT3G14430			unknown protein		Lus10030201 [exp]	19.0	0.7642

Compare expression of checked genes

Lus10039392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.