Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22960 934 / 0 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) AT5G52920 387 / 5e-128 PKP-BETA1, PKP2, PKP1 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) AT1G32440 382 / 3e-126 PKP3 plastidial pyruvate kinase 3 (.1) AT5G63680 244 / 5e-74 Pyruvate kinase family protein (.1) AT5G08570 241 / 2e-72 Pyruvate kinase family protein (.1) AT4G26390 238 / 1e-71 Pyruvate kinase family protein (.1) AT3G04050 238 / 2e-71 Pyruvate kinase family protein (.1) AT3G55650 236 / 7e-71 Pyruvate kinase family protein (.1) AT3G25960 236 / 1e-70 Pyruvate kinase family protein (.1) AT5G56350 229 / 3e-68 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006633 [exp] 1153 / 0 AT3G22960 920 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012446 [exp] 611 / 0 AT3G22960 616 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033756 [exp] 595 / 0 AT3G22960 599 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012445 [exp] 470 / 1e-159 AT3G22960 479 / 7e-163 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033757 [exp] 420 / 1e-141 AT3G22960 429 / 5e-145 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10000672 [exp] 383 / 2e-126 AT1G32440 830 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10011057 [exp] 380 / 9e-125 AT1G32440 827 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10039316 [exp] 358 / 2e-117 AT5G52920 902 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Lus10003439 [exp] 243 / 2e-73 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G159700 [exp] 999 / 0 AT3G22960 945 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.010G080700 [exp] 985 / 0 AT3G22960 930 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.001G289300 [exp] 618 / 0 AT3G22960 623 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.009G084700 [exp] 618 / 0 AT3G22960 620 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.012G034000 [exp] 392 / 9e-130 AT5G52920 970 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Potri.001G145300 [exp] 380 / 2e-125 AT1G32440 846 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.003G088700 [exp] 369 / 3e-121 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.010G254900 [exp] 248 / 3e-75 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 238 / 2e-71 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 238 / 2e-71 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10039396 pacid=23175708 polypeptide=Lus10039396 locus=Lus10039396.g ID=Lus10039396.BGIv1.0 annot-version=v1.0 ATGTCTTCTCAGTCGCTTCATTTCTTCACTCCCTCCTCTACCACCTGCCCAAACATCACCGTCCCCAAGCCTTCACTTCCTGCTCTAAATCGCCGCTTGA AGTTTGCTATCTCTCCCAGGACCTTCTCCATCAGAGCCGCTTCCGCTTCTTCAGATCCAAATCCTACCACGCCGCATGGGGTTCTTGCCAATAATGGAGC CGGAAGCAGTGTTGTCGCGCCGCCGGATTCCAGCTCGATTGATGTGGATAAGGTAACTGAGGCGGAACTGAAGGAGAATGGATTCCGGAGCAGTAGAAGG ACGAAGCTGGTGTGCACGATCGGCCCCAATACCTGCGGTTCCGAGCAGCTCGAGGCGTTGGCCGTCGGAGGAATGAATGTGGCGAGGATCAATATGTGCC ACGGGACCAGGGAGTGGCATAAGCGAGTGATAGAGCGGGTTAGGAAGTTGAACGAGGAGAAGGGATATGCGGTTGCCATTATGATGGATACCGAAGGGAG TGAGATTCATATGGGAGATCTTGGCGGCGCTTCCTCCGCCAAAGCTGAGGATGGCGAAGTCTGGACTTTCAGTGTTAGAGCTTACGATGCAAATCGCCCT GAACGCACCATTACTGTCAGTTATGATGGTTTCGCGGAAGATGTGAAGGTTGGGGACGAGTTACTTGTCGATGGTGGTATGGTTAGGTTCGAGGTGATCG AAAAAATTGGACCTGATGTCAAATGTACCTGTACTGATCCTGGACTATTGTTGCCGCGTGCTAACTTGACTTTCTGGAGGGATGGAAGTTTGGTACGAGA ACGTAATGCAATGCTTCCTACAATTTCCCCCAAGGATTGGCTGGACATTGATTTTGGAATTGCGGAGTCCGTTGATTTCATTGCAGTATCATTTGTGAAG TCAGCTGAAGTGATAAACCATCTTAAGAGCTACATTGCTGCACGCTCTCGTGATAATGACGTAGCAGTCATAGCAAAGATAGAGAGTATTGATTCATTGA AGAACTTGGAAGAGATCATTCAAGCATCAGATGGAGCTATGGTAGCGAGAGGAGATCTGGGTGCTCAGATTCCATTAGAACAGGTACCATCAGCCCAGCA AAAGATTGTTCAGATGTGCAGGCAGCTGAACAAGCCTGTCATTGTTGCATCTCAACTGCTTGAATCTATGATCGAATATCCTACACCTACAAGAGCAGAG GTGGCCGATGTCTCTGAAGCTGTTAGGCAAAGGGCAGATGCTTTGATGCTCTCTGGAGAATCGGCTATGGGTCAATTTCCAGACAAAGCACTGGCTGTCC TAAGGAGTGTGAGTGTAAGAATTGAGAAGTGGTGGAGAGAAGAAAAGCATCATGAAGCTATGGAACTCTCAGATGTTGGGTCATCATTCTCTGACCGTAT TTCGGAAGAGATTTGTAATTCTGCTGCTAAGATGGCAAACAATCTGGAGGTGGATGCCCTATTCGTGTACACAAAGACTGGTCATATGGCATCTCTACTG TCTCGGTGCCGACCTGATTGCCCAATCTTTGCCTTCACAACATCAACATCGGTAAGGAGAAGGCTGAACCTTCAGTGGGGACTCATACCTTTCCGGCTGA GCTTTTCTGATGACATGGAAAGCAACCTCAGCAGAACCTTCTCGTTGCTCAAGGCTAGAGGAATGATCAAATCCGGGGACCTTGTTATTGCCGTCTCAGA CATGCTGCAGTCCATCCAAGTCATGAATGTACCTTAA
AA sequence Show only first row Show all	>Lus10039396 pacid=23175708 polypeptide=Lus10039396 locus=Lus10039396.g ID=Lus10039396.BGIv1.0 annot-version=v1.0 MSSQSLHFFTPSSTTCPNITVPKPSLPALNRRLKFAISPRTFSIRAASASSDPNPTTPHGVLANNGAGSSVVAPPDSSSIDVDKVTEAELKENGFRSSRR TKLVCTIGPNTCGSEQLEALAVGGMNVARINMCHGTREWHKRVIERVRKLNEEKGYAVAIMMDTEGSEIHMGDLGGASSAKAEDGEVWTFSVRAYDANRP ERTITVSYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCTCTDPGLLLPRANLTFWRDGSLVRERNAMLPTISPKDWLDIDFGIAESVDFIAVSFVK SAEVINHLKSYIAARSRDNDVAVIAKIESIDSLKNLEEIIQASDGAMVARGDLGAQIPLEQVPSAQQKIVQMCRQLNKPVIVASQLLESMIEYPTPTRAE VADVSEAVRQRADALMLSGESAMGQFPDKALAVLRSVSVRIEKWWREEKHHEAMELSDVGSSFSDRISEEICNSAAKMANNLEVDALFVYTKTGHMASLL SRCRPDCPIFAFTTSTSVRRRLNLQWGLIPFRLSFSDDMESNLSRTFSLLKARGMIKSGDLVIAVSDMLQSIQVMNVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10039396 [exp]	0	1
AT5G13100			unknown protein		Lus10037045 [exp]	3.2	0.8940
AT5G12260			unknown protein		Lus10036072 [exp]	3.7	0.8960
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026594 [exp]	4.7	0.9110
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10014511 [exp]	6.2	0.9077
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	8.8	0.9074
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10001566 [exp]	13.4	0.8845
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10037059 [exp]	17.2	0.8951
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	19.4	0.8920
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10010670 [exp]	21.2	0.9000
AT4G24175			unknown protein		Lus10017264 [exp]	21.5	0.8910

Compare expression of checked genes

Lus10039396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.