Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22970 326 / 3e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT4G14620 302 / 2e-99 Protein of unknown function (DUF506) (.1) AT2G38820 265 / 2e-85 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT3G54550 194 / 3e-58 Protein of unknown function (DUF506) (.1) AT2G39650 124 / 4e-32 Protein of unknown function (DUF506) (.1) AT3G07350 124 / 5e-32 Protein of unknown function (DUF506) (.1) AT3G25240 115 / 5e-29 Protein of unknown function (DUF506) (.1) AT4G32480 115 / 8e-29 Protein of unknown function (DUF506) (.1) AT1G77145 110 / 3e-27 Protein of unknown function (DUF506) (.1) AT1G12030 109 / 8e-27 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006634 [exp] 593 / 0 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10014718 [exp] 299 / 6e-98 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10024840 [exp] 291 / 8e-95 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10018754 [exp] 288 / 3e-93 AT2G38820 319 / 6e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10003087 [exp] 281 / 1e-90 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10023412 [exp] 142 / 2e-38 AT2G39650 273 / 2e-91 Protein of unknown function (DUF506) (.1) Lus10000956 [exp] 135 / 9e-37 AT2G39650 266 / 1e-89 Protein of unknown function (DUF506) (.1) Lus10003174 [exp] 134 / 1e-35 AT3G07350 253 / 2e-83 Protein of unknown function (DUF506) (.1) Lus10002695 [exp] 132 / 6e-35 AT2G39650 313 / 4e-107 Protein of unknown function (DUF506) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G159800 [exp] 434 / 3e-150 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.010G080600 [exp] 418 / 3e-144 AT3G22970 371 / 3e-127 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.002G046300 [exp] 312 / 1e-102 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G216900 [exp] 309 / 1e-101 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G058200 [exp] 133 / 8e-36 AT2G38820 154 / 3e-45 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G188100 [exp] 131 / 3e-35 AT1G77160 169 / 8e-52 Protein of unknown function (DUF506) (.1) Potri.007G109700 [exp] 130 / 1e-34 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.004G001400 [exp] 131 / 2e-34 AT1G62420 209 / 2e-66 Protein of unknown function (DUF506) (.1) Potri.008G056100 [exp] 129 / 9e-34 AT2G39650 293 / 3e-99 Protein of unknown function (DUF506) (.1) Potri.010G203700 [exp] 127 / 4e-33 AT2G39650 287 / 9e-97 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10039397 pacid=23175618 polypeptide=Lus10039397 locus=Lus10039397.g ID=Lus10039397.BGIv1.0 annot-version=v1.0 ATGCCTCCTATGAAGATCCAGCCAATCGATGTCGATTCTCAGATGCCTCCGATTCCGCCCAGAGCCGAGCCGGCGAAACCGGTATTGAAATCGCGGCTGA AGAGGCTCTTTGACCGTCAGTTGCCGAGTGTGCTGAGGATTTCGTCTGTTGATAAGCCGATTCCCGGCGACGCGCAGCAGTACGGGGTCAAAGATGCCGC CGGAGTAGGAGCTGCAGCTGGAGGTGCCGAGTTCGAGCCGACCTCGGTGATTTTGGCCAAAATGGTGCAGAATTACATAGAGGAGACGAACGAGAAGCCT TTCCGCGGTCGCCATCGCTGCAATTGCTTTAACGGGAACACCAATGACAGCTCCGATGATGAATTTGATGTGTTCGATGGCGGTTTTGGCGAGTCGGTTA TCATCAATGGACCTCCAGGGGACGCCAACGATATTCTCAAGAGTCTTATTCCGTGCGCGAGCATAACCGAGAGGAATCTCCTTGCGGATGCAGCGGCGAT CGTCGAAAAGAACAAGAATCATAAACAGAAAGACGAATTAAGGAAGATCGTTGCCGACGGGTTATCGGCGGCAGGCTATGATAGCTCCATCTGCAAGTCC AAATGGGAGAAATCCTCTTCTTATCCAGCCGGTGAATACGAGTACGTGGATGTGATCGTTGACGGTGAGAGACTGTTGATTGACATTGACTTCAGATCGG AGTTCGAGATAGCTCGATCGACTGGTGCTTACAAAGCCGTACTTCAATCTCTGCCGTTCTTGTTCGTCGGCAAGCCAGAGCGGCTCGGCCAGATCGTGTC GATCGTATCTGAGGCTGCGAGGCAGAGCCTGAAGAAGAAAGGGATGCACTTCCCTCCATGGAGGAAAGCCGAGTACATCCGGGCCAAGTGGCTATCGCCG TTCACCAGACTAGCCGACACGGCTCCCGACTGCAAAGCGGAAGAGCACCAGAACGGAGGAGAGCTGCCGGAAGGAACGGCAAGAGACGAATGTTCTGGAG AGCTAGAGCTGATTTTTGGTGAGAAAGCAACGATGTCTTCGGAGAATTCGTCGTCGTCAACGACACCTTCTCCAGCAACGAGCTCCGATGGCGAAGAGAC AACGAAGGTGGAGACGGCGGTAGCATGGCAACCGCCGGCAGNNAAGAAACCCGCCGGCAGTGAAGCCGAAGAGTGTAGAGAGGAGAACGAAGATGGTGAC CGGATTAGCTTCTCTTCTGAAAGAGAAACCATAAGAGAAATTTTGGACTTTTCCGCCTTCTTTTTTTTTTTATTAATTTTGTCCAGGAAGAAATCAACGG AGATGAATTTTGGATGGGGAAATATTCCTGATCTGATGATGGAATCAAGTGAATGGAGTAGTGCTCGTTTCCCTATGCAGCATACATATCTTTTAGGTGA TGTTCCTGTGAAGGGGAACAATGGAGAATGA
AA sequence Show only first row Show all	>Lus10039397 pacid=23175618 polypeptide=Lus10039397 locus=Lus10039397.g ID=Lus10039397.BGIv1.0 annot-version=v1.0 MPPMKIQPIDVDSQMPPIPPRAEPAKPVLKSRLKRLFDRQLPSVLRISSVDKPIPGDAQQYGVKDAAGVGAAAGGAEFEPTSVILAKMVQNYIEETNEKP FRGRHRCNCFNGNTNDSSDDEFDVFDGGFGESVIINGPPGDANDILKSLIPCASITERNLLADAAAIVEKNKNHKQKDELRKIVADGLSAAGYDSSICKS KWEKSSSYPAGEYEYVDVIVDGERLLIDIDFRSEFEIARSTGAYKAVLQSLPFLFVGKPERLGQIVSIVSEAARQSLKKKGMHFPPWRKAEYIRAKWLSP FTRLADTAPDCKAEEHQNGGELPEGTARDECSGELELIFGEKATMSSENSSSSTTPSPATSSDGEETTKVETAVAWQPPAXKKPAGSEAEECREENEDGD RISFSSERETIREILDFSAFFFFLLILSRKKSTEMNFGWGNIPDLMMESSEWSSARFPMQHTYLLGDVPVKGNNGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22970			Protein of unknown function (D...		Lus10039397 [exp]	0	1
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10009054 [exp]	4.0	0.8377
AT2G35700	AP2_ERF	ATERF38	ERF family protein 38 (.1)		Lus10004738 [exp]	6.0	0.7796
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10028978 [exp]	9.3	0.8176
AT3G22550			Protein of unknown function (D...		Lus10010568 [exp]	19.2	0.8038
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10030301 [exp]	20.7	0.7963
AT1G67340			HCP-like superfamily protein w...		Lus10011362 [exp]	28.3	0.7291
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032585 [exp]	30.6	0.7944
AT5G16550			unknown protein		Lus10033497 [exp]	32.1	0.7303
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10030175 [exp]	38.7	0.7415
AT5G58520			Protein kinase superfamily pro...		Lus10031864 [exp]	39.9	0.7715

Compare expression of checked genes

Lus10039397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.