Plant FIBer expression Database

Lus10039398 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G22990 589 / 0 LFR LEAF AND FLOWER RELATED, ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006635
[exp]
830 / 0 AT3G22990 602 / 0.0 LEAF AND FLOWER RELATED, ARM repeat superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G159900
[exp]
694 / 0 AT3G22990 577 / 0.0 LEAF AND FLOWER RELATED, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10039398 pacid=23175651 polypeptide=Lus10039398 locus=Lus10039398.g ID=Lus10039398.BGIv1.0 annot-version=v1.0
ATGCAGAAACGGGATCAGAACAAGTTTGGTAGCGCAGCCGGCGGCACAGGGGCACCTCCGCCGAAAAGAGGCCGCCCTTTCGGTAGCACGAACAGCAATT
CTTCTTCCGGCGCTGGCGGGGACGCAGCAGCTCCGTTCACTCTGCTCGGCCCTTCTCTCCAGGTTCACAACACATTTGCCGATCAAAATAATAAGAGGAT
AGTTCTGGCACTCCAGAGTGGACTGAAGAGCGAGCTGAGATGGGCGTTGAACACCCTCACTCTTCTCTCTTTCAAAGAGAAGGAAGATCTCCGCAAAGAT
TCCTTAGCTAAAATCCCAGGCTTGCTCGACGCTCTCCTCCAAGTTATAGATGACTGGCGTGATATAGCGCTTCCCAAAGAACTAAGCAAGAGTGCTAGAG
CCCGTACGTTGGGAGCAAATTCTCTTGTGACAGGGTTTGGGCATGAATACAAGACCTTAGGATCAGTGACTGCTCCTTTAAATCCAGTGTCAGGATCTAG
TACAAATGAGGCATCGGTACTGAAGAATGCTGCCAAAGTTCGTTCTTCGGAGTGGTGGTCAGATGAGGATGGTATCTTCAATTTGGATGATGAAGGAAGG
GCTGAAAGGCAGCAGTGTGCTGTGGCTGCTTCAAATATCATACGCAATTTTTCATTCATGCCAGAAAATGAAGTTGTTATGGCCCAACTCCGGCATTGTG
TGGAAACGGTATTCCAGTGTATGGAGGATCACAACTCTGAGGATGAAGAACTGGTAACAAATGCCCTTGAAACAGTTGTAAATTTGGCTCCTTTGCTCGA
TCTTCGAATTCTAAGCTCGCAGAAGCCTAGCTTCATCAATATGACAGAAAAAAGGGCTGTTCAAGCTATTATGGCAATTCTGGGGTCTTCAGTTAAAGCC
TGGCACTGTGCTGCTGCTGAACTAATAGGCCGCTTAATTATAAATCCTGACAACGAACCTTTCCTTCTTCCCTGCCTTCCACAGATACACAAGCGTCTAG
TAGATCTTTTGACCGTACAAGCAGCCGATGCACAAGCAGCTGCTGTCGGTGCTCTCTATAACTTAGCTGAAGTTAACATGGACTGCAGACTGAAGCTCGC
CAGTGAACGATGGGCGGTGGACCGGCTACTGAAAGTGATCAAAATGCCTCATCCAGTGCCAGAGATATGCAGGAAAGCAGCGATGATACTAGAGAGCTTA
GTCTCAGAGCCACAGAACAGGCAGTTGCTGCTGATCTACGAGAATTCGTTTGCGGAAATTCTATTCTCGGAGAGCAAGTATTCAGATACGTTTGCCAGGA
TCTTGTATGAACTAACGGCCAGGCCAAACAGCAAGTTCACAGCAGCTCGCGGGATTTGGGGGATGTATTAG
AA sequence
>Lus10039398 pacid=23175651 polypeptide=Lus10039398 locus=Lus10039398.g ID=Lus10039398.BGIv1.0 annot-version=v1.0
MQKRDQNKFGSAAGGTGAPPPKRGRPFGSTNSNSSSGAGGDAAAPFTLLGPSLQVHNTFADQNNKRIVLALQSGLKSELRWALNTLTLLSFKEKEDLRKD
SLAKIPGLLDALLQVIDDWRDIALPKELSKSARARTLGANSLVTGFGHEYKTLGSVTAPLNPVSGSSTNEASVLKNAAKVRSSEWWSDEDGIFNLDDEGR
AERQQCAVAASNIIRNFSFMPENEVVMAQLRHCVETVFQCMEDHNSEDEELVTNALETVVNLAPLLDLRILSSQKPSFINMTEKRAVQAIMAILGSSVKA
WHCAAAELIGRLIINPDNEPFLLPCLPQIHKRLVDLLTVQAADAQAAAVGALYNLAEVNMDCRLKLASERWAVDRLLKVIKMPHPVPEICRKAAMILESL
VSEPQNRQLLLIYENSFAEILFSESKYSDTFARILYELTARPNSKFTAARGIWGMY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G22990 LFR LEAF AND FLOWER RELATED, ARM r... Lus10039398
[exp]
0 1
AT1G17370 UBP1B oligouridylate binding protein... Lus10008130
[exp]
6.5 0.8202
AT1G17370 UBP1B oligouridylate binding protein... Lus10013167
[exp]
8.0 0.8143
AT3G51670 SEC14 cytosolic factor family ... Lus10012219
[exp]
9.5 0.7932
AT3G52890 KIPK KCBP-interacting protein kinas... Lus10008634
[exp]
15.1 0.8092
AT5G08780 winged-helix DNA-binding trans... Lus10002941
[exp]
16.5 0.8032
AT1G48480 RKL1 receptor-like kinase 1 (.1) Lus10041991
[exp]
23.1 0.7986
AT3G23950 F-box family protein (.1) Lus10040838
[exp]
28.4 0.7465
AT3G17840 RLK902 receptor-like kinase 902 (.1) Lus10041992
[exp]
29.7 0.7752
AT5G26710 Glutamyl/glutaminyl-tRNA synth... Lus10014335
[exp]
34.5 0.7281
AT3G57880 Calcium-dependent lipid-bindin... Lus10012026
[exp]
37.8 0.7530

Lus10039398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.