Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04220 655 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT2G26640 636 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT5G43760 627 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT1G19440 576 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 575 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G01120 568 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT4G34510 563 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G68530 527 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G25450 523 / 0 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT2G26250 499 / 5e-173 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006636 [exp] 753 / 0 AT1G04220 618 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10041177 [exp] 641 / 0 AT1G04220 782 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10043300 [exp] 629 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10019446 [exp] 628 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10006637 [exp] 628 / 0 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10042318 [exp] 583 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 582 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10001657 [exp] 576 / 0 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10021895 [exp] 576 / 0 AT1G04220 694 / 0.0 3-ketoacyl-CoA synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G080400 [exp] 722 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 720 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 720 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079700 [exp] 718 / 0 AT2G26640 756 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 672 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 642 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.018G032200 [exp] 640 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079300 [exp] 638 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 637 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080000 [exp] 602 / 0 AT2G26640 573 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10039399 pacid=23175565 polypeptide=Lus10039399 locus=Lus10039399.g ID=Lus10039399.BGIv1.0 annot-version=v1.0 ATGTCATCGGAATCTCAGAAAACCGGCGGCCATTACTTTTTCCCGTTAACGTCATCCGTTAAGCTCAAATACGTCAAGCTGGGATACCACTACTTAGTCA CTAATTCCGTCTACCTCCTCCTGATCCCTCTCACCGTCGTAGTTTTAGCCCAGCTCTCTTCCCTCTCCGCATCCGACTTCCTCCAACTCTGCACCAAAAA CTCCGCCATCCTCACCCTCAGTTCCCTCGCCTTAGCCCTCATCGCCACCGTCCACGTCATCCACTCCCCGAGAAAAGTCTACCTACTCGACTTCGCATGC TACAGGCCCAGCCCGGCCCATCTCTGCTCCAAGGAGGTCTTCATGAGAGCCTCATCCGCTACGGGGGAGTTCACCGAGGAAAGCCTGGAGTTCCAACGCA AGATTCTCGAGAAGTCCGGGTTCGGGCAGATGACGTACGCCCCAACCCGGCTTCTGGCCTGTAAAACGCCGCCGGATCAGTCGATGGAGGCGGCCAGGGA AGAGACGGAGGCGGCGATGTTTGGTGCGATTGATGATCTGCTGGAGAAGAGCGGGGTGAGTGTTAGGGAGATCGGAGTGTTGGTGGTTAACAGTAGCTTG TTCAATCCGACGCCGTCTCTTTCGGCGGTGATTGTGAATCGGTATAAGCTCAGAGGGAACGTGTTGAGCTATAGCATTGGCGGGATGGGTTGCAGCGCTG GCTTGATCTCCGTTGACTTGGCACGTGACCTCTTGCAGGTTCATCCCAACACATATGCTCTGGTAGTGAGCACAGAGAACATTACTCGGAATTGGTACTT CGGCAACCACCGCCCGATGCTCGTGACCAACTGCCTCTTCCGCGTCGGAGCAGCCGCCGTACTCCTAACCAACCGTCCATCCGACCGCCGACGATCCAAG TACCAGCTCCTCCACACCGTCCGGACCCACAAGGGCGCCGACGACAAATCCTACGGCTGCGTTTTCCAGCAGGAAGACGACAGGAAAACCGTTGGAGTCT CCCTGTCGAAGGACCTGATGGCCGTCGCCGGGGAAGCCCTGAAAACCAACATAACGACGCTGGGCCCACTGGTCCTCCCGATTTCGGAGCAGATCCTGTT CCTAGCGACACTGATGGCTAAGAAAGTGCTGCAGTGGAAAGTGAAGCCGTACATTCCGGATTTCAAGCTGGCGTTCGAGCACTTCTGCATCCACGCGGGA GGCAGAGGAGTGCTGGACGAGATAGAGAAGAGCTTGGAACTTACGGAGTGGCACATGGAACCTTCTAGAATGACGCTGTACAGGTTCGGGAACACGTCGA GCAGTTCGCTCTGGTACGAGCTGGCGTATAGCGAGGCGAAAGGAAGAGTGAAGAAAGGGGATCGGGTTTGGCAGATTGGGTTCGGGTCGGGTTTCAAGTG CAACAGTGCAGTGTGGCGTGCTGTGAGGTGTATTGATCAATCTGGGGAGAAGAAGAATGTTTGGTGTGATGAGATTGACGAGTTTCCTGTCAAAGTTCCC AAAGTGGCGCCAATTGTTTACTAA
AA sequence Show only first row Show all	>Lus10039399 pacid=23175565 polypeptide=Lus10039399 locus=Lus10039399.g ID=Lus10039399.BGIv1.0 annot-version=v1.0 MSSESQKTGGHYFFPLTSSVKLKYVKLGYHYLVTNSVYLLLIPLTVVVLAQLSSLSASDFLQLCTKNSAILTLSSLALALIATVHVIHSPRKVYLLDFAC YRPSPAHLCSKEVFMRASSATGEFTEESLEFQRKILEKSGFGQMTYAPTRLLACKTPPDQSMEAAREETEAAMFGAIDDLLEKSGVSVREIGVLVVNSSL FNPTPSLSAVIVNRYKLRGNVLSYSIGGMGCSAGLISVDLARDLLQVHPNTYALVVSTENITRNWYFGNHRPMLVTNCLFRVGAAAVLLTNRPSDRRRSK YQLLHTVRTHKGADDKSYGCVFQQEDDRKTVGVSLSKDLMAVAGEALKTNITTLGPLVLPISEQILFLATLMAKKVLQWKVKPYIPDFKLAFEHFCIHAG GRGVLDEIEKSLELTEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRVKKGDRVWQIGFGSGFKCNSAVWRAVRCIDQSGEKKNVWCDEIDEFPVKVP KVAPIVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039399 [exp]	0	1
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10012901 [exp]	1.0	0.9838
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10021904 [exp]	1.4	0.9833
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10038959 [exp]	3.5	0.9783
					Lus10032253 [exp]	3.9	0.9790
AT1G61050			alpha 1,4-glycosyltransferase ...		Lus10011206 [exp]	4.2	0.9666
AT2G43870			Pectin lyase-like superfamily ...		Lus10002124 [exp]	4.5	0.9731
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	5.7	0.9751
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024626 [exp]	6.0	0.9702
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	6.7	0.9765
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	7.3	0.9761

Compare expression of checked genes

Lus10039399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.