Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04220 644 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT2G26640 624 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT5G43760 624 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT1G01120 552 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G19440 540 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT4G34510 533 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G16280 533 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G68530 515 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G25450 505 / 2e-177 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT2G46720 484 / 7e-170 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006637 [exp] 740 / 0 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10041177 [exp] 657 / 0 AT1G04220 782 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10019446 [exp] 620 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10043300 [exp] 618 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10021895 [exp] 583 / 0 AT1G04220 694 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10002691 [exp] 577 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10030209 [exp] 575 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10039399 [exp] 569 / 0 AT1G04220 689 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10012611 [exp] 568 / 0 AT1G01120 863 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160000 [exp] 669 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079300 [exp] 649 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 648 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 645 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.018G032200 [exp] 634 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080400 [exp] 617 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079700 [exp] 616 / 0 AT2G26640 756 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 615 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 613 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080000 [exp] 607 / 0 AT2G26640 573 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10039401 pacid=23175579 polypeptide=Lus10039401 locus=Lus10039401.g ID=Lus10039401.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAGAGTTCATCACCACCACCACAACAACCGGCTGTGACGGTGGAGCCTCAAAGGAGAAACAACAAGCTCCCAAACTTCCTCCTCTCAGTCC GTCTCAACCCATTTATCCACACTCTCGGCCCAAGACCTGGCCCATATGTGGGACCAGCTCCGTTTCAACATGGTCTCCGTCACCCTCTGCTCGGGCCTAA TCAGACTCACCTCCGAGCGGCTGTTCTGCGGGTCCCGCCCAACCCGAATATGGCAGAGGCCAGGAAGGAAGCCGAGATGGTGATGTTCAGTGCCATTGAT GAGCTGTTGGGGAAGACGGGGGTCAAGGCTAAGGATATTGGGATTTTGATTGTCAACTGTAGCTTGTTCAATCCGACGCCGTCTTTGTCTGCTATGGTTG TCAATCACTACAAGCTTAGGGGCAATGTTGCCAGTTTTAATCTTGGTGGGATGGGCTGTAGTGCTGGCCTCATCTCTATCGACCTTGCCAAGCAGCTTTT GCAGGTGCATCCCAACTCGTACGCGCTAGTAGTGAGCATGGAGAACATCACCCTCAACTGGTACTTCGGCAACGACCGTTCCATGTTAGTCTCGAACTGC CTGTTCCGCATGGGGGGCGCCGCCATCCTTCTCTCCAACCGTTCCCCCGACCGCCGCCGATCCAAGTACCAGCTCGTCCACACCGTTCGTACCCACAAGG GTGCAGACGACAGGTCATACGGCTGCGTCTTCCAACGTGAAGACGACACCGGCCGCGTCGGTGTATCCCTCTCCAAGGACCTCATGGCCGTCGCCGGCGA GGCCCTGAAGACCAACATCACAACCCTCGGCCCACTCGTCCTCCCGATGTCGGAACAGTTGCTTTTCTTCGCAACCCTTGTGGCTCGTAAGGTGCTCCAG ATGAAGAAGATAAAGCCGTACATACCGGACTTCAAGCTGGCGTTCGAGCACTTCTGTATCCATGCAGGAGGAAGGGCGGTTCTTGACGAGCTGGAGAAGA ATCTGGAACTTTCCGACTGGCACATGGAACCTTCTAGAATGACGCTCAACCGGTTCGGAAACACGTCCAGCAGCTCACTGTGGTATGAGTTGGCGTACAG TGAGGCCAAAGGGAGGATGAGGAAAGGAGACCGGACGTGGCAGATTGCGTTCGGGTCGGGTTTTAAGTGCAACAGTGCGGTTTGGAAGGCGCTCCGGACG GTTGATCCGGCCAAGGAGAAGAACCCTTGGGTGGATGAGATACATGAGTTCCCGGTTCATGTTCCTAAGGTGTCCTCTGTCATTAATGGTGGTGAAACCA AGCAATAG
AA sequence Show only first row Show all	>Lus10039401 pacid=23175579 polypeptide=Lus10039401 locus=Lus10039401.g ID=Lus10039401.BGIv1.0 annot-version=v1.0 MAEESSSPPPQQPAVTVEPQRRNNKLPNFLLSVRLNPFIHTLGPRPGPYVGPAPFQHGLRHPLLGPNQTHLRAAVLRVPPNPNMAEARKEAEMVMFSAID ELLGKTGVKAKDIGILIVNCSLFNPTPSLSAMVVNHYKLRGNVASFNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNDRSMLVSNC LFRMGGAAILLSNRSPDRRRSKYQLVHTVRTHKGADDRSYGCVFQREDDTGRVGVSLSKDLMAVAGEALKTNITTLGPLVLPMSEQLLFFATLVARKVLQ MKKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSDWHMEPSRMTLNRFGNTSSSSLWYELAYSEAKGRMRKGDRTWQIAFGSGFKCNSAVWKALRT VDPAKEKNPWVDEIHEFPVHVPKVSSVINGGETKQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039401 [exp]	0	1
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006637 [exp]	1.0	0.8857
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10035438 [exp]	2.0	0.8322
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10036940 [exp]	6.9	0.7530
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Lus10030035 [exp]	7.7	0.7649
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10040021 [exp]	10.7	0.7890
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10042339 [exp]	11.0	0.7479
					Lus10005128 [exp]	21.2	0.7707
AT5G58520			Protein kinase superfamily pro...		Lus10031294 [exp]	27.2	0.6685
					Lus10018645 [exp]	28.9	0.7187
AT5G20270		HHP1	heptahelical transmembrane pro...		Lus10038120 [exp]	29.5	0.7314

Compare expression of checked genes

Lus10039401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.