Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68940 107 / 3e-23 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT1G20780 89 / 1e-17 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G76390 77 / 4e-14 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT4G14615 57 / 6e-10 unknown protein AT1G23030 63 / 1e-09 PUB11 ARM repeat superfamily protein (.1) AT5G42340 63 / 1e-09 PUB15 Plant U-Box 15 (.1) AT3G19380 60 / 4e-09 PUB25 plant U-box 25 (.1) AT1G71020 60 / 7e-09 ARM repeat superfamily protein (.1.2) AT1G49780 60 / 7e-09 PUB26 plant U-box 26 (.1) AT3G46510 58 / 4e-08 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006638 [exp] 309 / 1e-97 ND / Lus10005988 [exp] 315 / 6e-91 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 191 / 2e-49 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10034132 [exp] 156 / 9e-39 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10043453 [exp] 152 / 2e-37 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013216 [exp] 145 / 6e-35 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10006639 [exp] 122 / 5e-33 AT4G14615 78 / 7e-21 unknown protein Lus10041178 [exp] 94 / 9e-23 AT4G14615 93 / 9e-27 unknown protein Lus10030734 [exp] 95 / 2e-19 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G079200 [exp] 1242 / 0 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.002G175800 [exp] 332 / 4e-97 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 331 / 9e-97 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 325 / 1e-94 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.003G201000 [exp] 155 / 2e-38 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.002G007800 [exp] 155 / 2e-38 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.001G024600 [exp] 153 / 8e-38 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.005G253400 [exp] 140 / 8e-34 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.001G069501 [exp] 134 / 1e-31 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.010G136500 [exp] 90 / 6e-18 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10039402 pacid=23175619 polypeptide=Lus10039402 locus=Lus10039402.g ID=Lus10039402.BGIv1.0 annot-version=v1.0 ATGTCGAACATCGGAGTTTCGAATGTGGTGGTAGAGGTAGCTAAGTTCGCGGTGTACGTCGGAGTGCCAGTCTTTCTTATGAGCTTCGCCGCCGACGCCA AGTTCCTCCACAAGCTAACCGGCAAGCGAGAGTACATAGTGTATCCAGCAGAGCTGGAAAGACCTCCATCCACAGAAGAACTCAGAGATAATGCTCGCCA ATTAGCTCGAGACAGGAAAGCTCAGCTGAGAGAAGACCCCAAGTCAATGGTGGAACATCTCTATGGCGTACCAAAGATGCAATCCTTCCTTCTGACTGCT CTCATTTTCAGCCACAACCAAACAACTACAACAGGAGAGGTCATCAAAACAGCACAAGCTGCGAAAGACATTCTAATTGAAAAGGATAGCTTCAAAGTCC TGTCCCAGCACCTCTTTGACATTGAGCCTGTGTTAAAGGAGCTGCAGCTTCAAAAACTCAACGATTCTCAACCTGCCAGGTTAGCACTCGAGTTCCTTCA AGCTGATGTCAACAAGGCTACTAACTTGGTTGACAAGTACAAGAATCGATCCCGGTTCTACCTGCTGCTCAGATGCAGGCACATTGTGAATGAGGTCCAA CAAGTCACTAGGGACATTGGCAAGTCTTTAGCTGGAATGTCCCTTGCTAATACAGAAGTCCTGGCCGGGATATCTGATCAGGTCCACAGGCTTCAGCATG AGATGCAAAGGGTTAAACTTGAAGCTTCTCATTCTCAGCTTCAAATCCTTGACAAGCTAAACCAGGGCCTTAGAGATCAGAAGCTCGATCTTGGCTTCGC CAATGATATGCTTGAAGAAATAGCAAGTGCAGTTGGGGTTCCTGTGGAGCCTTTACAGATAAGTAGAGAGCTGGCAAGCTTCAAAGTGGAGAAAGAGGAA GCTGCTAGCCGGAAAGAGAGGGCCGAGGAGCTCTTCTTGGAGCAAGTCATTGAGCTACTTTCGAGAGCTGATGCTGCTAGGGACTATGAAGAAGTCGAGA AGCAGTATTACCAAAGACTTCGAGCCGTGGAGAGATATGATCCGAGAGAAGACTGCATTACTCCGCTTAATCCTTTCCTTTGTCGGATTACTAGGATGCT GATGATCGATCCTGTTAGTCTTTGCACTGGTACTACTTGTGAGAGAGCTGCTATTGAAACTCGCTTTGCCTGTGGAGAAACCACCGACCCAGAAACAGGT GAGGTTCTTGAGGATATGACATTGAGGCCAAACTTTCCTCTAAGACAATCAATAGAAGAATGGAGAGAGCTTAACTACTGCCTAAGAATCAGAGCTTGCA ATGCCAAAGTGTTGTCAGGAGAAGAGTTGTTGATAGATGATGCATTAAGCCATATGCAGACTCTCTTGAGAGAGAACTCCATCAACAAATATTGGGTGTC TATAGGAGGCCTTACCGACAATCTAATACAAATCCTTGATAGCTGCCACAATAAGGATCTCAAGACAAAGCTTTTAGTTACTTTGAAGGAGATAATAGAG GGGCATGCTCGAAATAAGGAAAAGGTGGCTAATGGTGATGGATGGGATCACATTGTTTTATGTTTAGCAGACGATCAAAGTATCTCGAAGGTTGCTGTAG AGTTGCTGCTTGAGTTGTTGCTGGATAGGTCTGGTTGGAATATTTCTGTTCTGAAGAAACTTTCTCAGCAAGGCAGCTCCATTTCTTCCCTTGTAACCCT ACTGAATGGTCCAGAAAGAGATTCAGGCGTAAATGCGGGGAAACTCTTGAATCAACTTTTCGAAATCGACGAGGAAAACATTCTCCACGCTGCGAAGTTT GGCTGGTATAAACCTCTTGTGGACCGGATAATTCAAGGGCCAGAACCTTCAAGGGTGTCAATGACAAAGTCTCTGGTTAGTATGGAGCTTTCGGAGTCAG ATATGGAGCTTCTTGGAAGAGAAGGAATAATTCCTACTCTGCTTGAAATGGTAGCATCCGGTGATATTCAATCAAAAGACTTGTCCTTGTCTGCTTTGGT CAAACTATCTGCCTGCCGTACCAATAAACAACTCATTGCTGCTGCTGGTGGGATTCCTCTCATTCTAACACTTTTGCTTCCCCCTCAAACACGCACAGTC CTTGTTACCAAATGCTGTGAAGTCCTTGACAGATTGTCTTCTGATGGTGATGGGATTGAGTTCTTTGTTGATCAGCATGGGGAACAAGTTGATCTAGAAC CAATCATCAATAATTTGTTAACTTTTCGTATTCCCATTCCATCGGTTCATATCCGGAAGCCTGCTTTAGGCGCACTTGTTGGGATGTTCCAATCTGATGC GGCCTTGGTTAAGGCTGCTCTTCTAACTGCAGCTGGAGGTGTGCCTTTAGTCCTTTCTCTTCTTGATGACACCGACTTGGAAATTCGCGAATCGGCCATC AATCTTCTCTTCCTATTCTCCCACCATGAACCGGAAGGCCTTGTCGAGTACCTCCTCAAGCCTAACAGGCTAGAGGTTCTTGTGGGGTTTCTTGAGAAAC AAGGTAAAAAATCTGATGTCCAAAACGCAGCTGCTGGTCTATTAGCAAACCTTCCCAAATCCGAGGCGAGTTTAACAAAGAAGCTGATTGAGATGGAGGG GGTCAATGCACTGATCAACATCATAAAAGTTGCAAGCATGGATGCAAAAGAGAATGCTCTCAGTGCACTCTTCAGGTTCACCGATCCCACGGACCTTGAG TCGCAGCGGATCGTGGTGGAACAAGGGGCTTATGATCTGCTTGTAGACTTGCTAACAACAGGATCAGTGACTGCAAAGGCAAGAGCAGCTGCACTCATTG GCGATCTATCCGCGAGCACCCCGAAACTCGTGGTTGTCGTCTCTAAACCACACTTTTGGTGGTGCTTCCGTCCAAGACGACGACGTCCCAACTTATGCCC GGCGCATGAAGGGATGTGTAGCGTGAAGACCACGTTTTGTTTGGTGGAAGCTAATGCTCTGCCAGGATTGGTACGGCTGTTGAAATCAGAAGTTGACGTG ATTGCTGTTGAAGCCATTCAGGCGCTGTCCACGCTGATTCATGCAGCTCATCCGAACAGAGGAGCCAATGTATTGCATGATGCTGATGCTATAAAGCCTG TGATTGAGGTTCTGAATTGGGGGAGTGATTCACTAAAAGAAGAAGCTTTGGGGCTGTTGCAGAAGGTTTTCCGGTCGAGGGAAATGGTGGAACATTATGG ATCGATGACGAGATTGATGCTTGTCGGGTTTGTGGGTCGGAGTATCTATGAGAATATTGGTGGGTTGGGTAGGAAGGCTACTATTCTTTTGGCACTTCTT GAACGCAATTCTAGATCCTCGTCTTCCCTTTTGCCTGGATTTTTTTGA
AA sequence Show only first row Show all	>Lus10039402 pacid=23175619 polypeptide=Lus10039402 locus=Lus10039402.g ID=Lus10039402.BGIv1.0 annot-version=v1.0 MSNIGVSNVVVEVAKFAVYVGVPVFLMSFAADAKFLHKLTGKREYIVYPAELERPPSTEELRDNARQLARDRKAQLREDPKSMVEHLYGVPKMQSFLLTA LIFSHNQTTTTGEVIKTAQAAKDILIEKDSFKVLSQHLFDIEPVLKELQLQKLNDSQPARLALEFLQADVNKATNLVDKYKNRSRFYLLLRCRHIVNEVQ QVTRDIGKSLAGMSLANTEVLAGISDQVHRLQHEMQRVKLEASHSQLQILDKLNQGLRDQKLDLGFANDMLEEIASAVGVPVEPLQISRELASFKVEKEE AASRKERAEELFLEQVIELLSRADAARDYEEVEKQYYQRLRAVERYDPREDCITPLNPFLCRITRMLMIDPVSLCTGTTCERAAIETRFACGETTDPETG EVLEDMTLRPNFPLRQSIEEWRELNYCLRIRACNAKVLSGEELLIDDALSHMQTLLRENSINKYWVSIGGLTDNLIQILDSCHNKDLKTKLLVTLKEIIE GHARNKEKVANGDGWDHIVLCLADDQSISKVAVELLLELLLDRSGWNISVLKKLSQQGSSISSLVTLLNGPERDSGVNAGKLLNQLFEIDEENILHAAKF GWYKPLVDRIIQGPEPSRVSMTKSLVSMELSESDMELLGREGIIPTLLEMVASGDIQSKDLSLSALVKLSACRTNKQLIAAAGGIPLILTLLLPPQTRTV LVTKCCEVLDRLSSDGDGIEFFVDQHGEQVDLEPIINNLLTFRIPIPSVHIRKPALGALVGMFQSDAALVKAALLTAAGGVPLVLSLLDDTDLEIRESAI NLLFLFSHHEPEGLVEYLLKPNRLEVLVGFLEKQGKKSDVQNAAAGLLANLPKSEASLTKKLIEMEGVNALINIIKVASMDAKENALSALFRFTDPTDLE SQRIVVEQGAYDLLVDLLTTGSVTAKARAAALIGDLSASTPKLVVVVSKPHFWWCFRPRRRRPNLCPAHEGMCSVKTTFCLVEANALPGLVRLLKSEVDV IAVEAIQALSTLIHAAHPNRGANVLHDADAIKPVIEVLNWGSDSLKEEALGLLQKVFRSREMVEHYGSMTRLMLVGFVGRSIYENIGGLGRKATILLALL ERNSRSSSSLLPGFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10039402 [exp]	0	1
AT2G41480			Peroxidase superfamily protein...		Lus10015555 [exp]	1.0	0.8801
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10003336 [exp]	2.4	0.8315
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10022639 [exp]	6.5	0.8025
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	7.2	0.8330
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10024089 [exp]	7.7	0.7861
AT5G47070			Protein kinase superfamily pro...		Lus10001088 [exp]	14.7	0.8307
					Lus10006638 [exp]	15.1	0.7770
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10027337 [exp]	19.6	0.8040
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10013675 [exp]	19.9	0.7691
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	20.0	0.7731

Compare expression of checked genes

Lus10039402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.