Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23000 343 / 2e-116 PKS7, ATSRPK1, ATSR2, CIPK7, SnRK3.10 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) AT4G14580 321 / 9e-108 CIPK4, SnRK3.3 SNF1-RELATED PROTEIN KINASE 3.3, CBL-interacting protein kinase 4 (.1) AT5G01810 275 / 1e-89 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G10930 263 / 6e-85 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G25110 264 / 2e-84 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G45820 261 / 3e-84 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G30960 259 / 2e-83 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G21326 255 / 7e-82 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G01140 254 / 1e-81 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT2G26980 250 / 1e-80 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006640 [exp] 507 / 0 AT3G23000 283 / 8e-92 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Lus10021892 [exp] 486 / 5e-172 AT3G23000 427 / 2e-147 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Lus10022749 [exp] 274 / 6e-89 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 270 / 4e-87 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10008582 [exp] 264 / 8e-86 AT5G58380 570 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 264 / 6e-85 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10021852 [exp] 261 / 7e-84 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10022590 [exp] 259 / 7e-84 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10042229 [exp] 259 / 3e-83 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G079000 [exp] 393 / 5e-136 AT3G23000 402 / 6e-138 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Potri.008G160200 [exp] 381 / 3e-131 AT3G23000 399 / 7e-137 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Potri.006G263500 [exp] 279 / 6e-91 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.019G048800 [exp] 272 / 2e-88 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 268 / 7e-87 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.016G133500 [exp] 267 / 5e-86 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G019900 [exp] 265 / 1e-85 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.019G127500 [exp] 259 / 4e-83 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.001G222600 [exp] 258 / 8e-83 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.009G021000 [exp] 256 / 6e-82 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10039404 pacid=23175459 polypeptide=Lus10039404 locus=Lus10039404.g ID=Lus10039404.BGIv1.0 annot-version=v1.0 ATGGCCCTGGCCGTCGGCGGCGACCTGTTCTCCAAGGTAGTCCAACGCGGCCGGATGAAGGAATCCGGCGCCCGCCGCTACTTCCAGCAGCTCGTCTCCG CGCTCCACTTCTGCCACGAGAACGGCGTCGCTCACCGCGACGTCAAGCCGCAAAACCTCCTCCTCGATTCCGTCGGCAACTTGAAGGTCTCCGACTTCGG ACTGTCCGCCTTGGCCGAGGCCGCGGAGGCTAAGAACGGCGTGAATGGGATCCTCCACACGGCGTGCGGCACTCCTGCGTTCACAGCGCCGGAAGTTGTG TACAGGAAAGGCTACGACGGGGAGAAAGCCGACGCATGGTCTTGCGGAGTCATCCTGTTCTTCCTTCTATCGGCTTCTCTGCCATTCGATGATAGCAATT TGGCTCTGATGTACAAGAAAATCCACAGGAAGCAGTATCAGATTCCGGCTTGGGTGTCCAAAGCGGCGAAATCGATTGTCCACCAACTGCTCGACCCAAA TCCCCAAACAAGGATGAGCATAGAAACTCTAATGAACCACCCTTGGTTTTTGAACAAGCTAGAAACGCCTGCACAGAGGAGTCTATTGGAGTCGGAGGAG TACTCGAAATCGTGTAAATTCAACAGCACGAGGGTGTCGAGCTTCAACGCGTTCGACATAATATCCATGTCGTCAGGGCTGGATTTGTCGGGGCTGTTCG AGGCAACGTGCAGGAAGGAGAAGAGATTCACATCGAAGGAGAGGTTAGGAAGAGTAATGGAAAGGGTGAGAGATGTGGGGAAGAAGCTAGAATACGTAGT GGAAGAAGGGAAAGGAGGAGGAGCAATCGGGTTGGCGAAAGGGAAACTTGTATTGGTGGTTGAAGCCATGGAAATAGCAGAGAAGATGGTGGTGGCTGAT GTCAGGGTTGCCAAAGGTTGTGGGGTGGAGTTTGAGCAAGTTCATTTGGTTGACTTGAAGAACGGACTGGGGGATCTTGTGCTCGAGTGGCATGGTGATC ATCATCTTCATGTTGCAGCATAG
AA sequence Show only first row Show all	>Lus10039404 pacid=23175459 polypeptide=Lus10039404 locus=Lus10039404.g ID=Lus10039404.BGIv1.0 annot-version=v1.0 MALAVGGDLFSKVVQRGRMKESGARRYFQQLVSALHFCHENGVAHRDVKPQNLLLDSVGNLKVSDFGLSALAEAAEAKNGVNGILHTACGTPAFTAPEVV YRKGYDGEKADAWSCGVILFFLLSASLPFDDSNLALMYKKIHRKQYQIPAWVSKAAKSIVHQLLDPNPQTRMSIETLMNHPWFLNKLETPAQRSLLESEE YSKSCKFNSTRVSSFNAFDIISMSSGLDLSGLFEATCRKEKRFTSKERLGRVMERVRDVGKKLEYVVEEGKGGGAIGLAKGKLVLVVEAMEIAEKMVVAD VRVAKGCGVEFEQVHLVDLKNGLGDLVLEWHGDHHLHVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10039404 [exp]	0	1
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10013298 [exp]	2.0	0.9010
AT3G27880			Protein of unknown function (D...		Lus10032145 [exp]	4.6	0.8978
AT2G43630			unknown protein		Lus10013892 [exp]	5.5	0.8898
AT4G28270		ATRMA2	RING membrane-anchor 2 (.1)		Lus10031641 [exp]	6.6	0.8919
AT1G23390			Kelch repeat-containing F-box ...		Lus10029127 [exp]	8.5	0.8818
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10035011 [exp]	9.7	0.9015
AT2G35120			Single hybrid motif superfamil...		Lus10017133 [exp]	11.2	0.8858
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	12.5	0.8786
AT4G22790			MATE efflux family protein (.1...		Lus10007006 [exp]	13.0	0.8175
AT1G48780			unknown protein		Lus10009004 [exp]	13.7	0.8796

Compare expression of checked genes

Lus10039404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.