Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14570 904 / 0 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) AT5G36210 100 / 2e-21 alpha/beta-Hydrolases superfamily protein (.1) AT2G47390 67 / 3e-11 Prolyl oligopeptidase family protein (.1) AT5G24260 62 / 2e-09 prolyl oligopeptidase family protein (.1) AT1G76140 57 / 4e-08 Prolyl oligopeptidase family protein (.1.2) AT1G20380 54 / 3e-07 Prolyl oligopeptidase family protein (.1) AT5G20520 49 / 7e-06 WAV2 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015363 [exp] 1269 / 0 AT4G14570 871 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10006641 [exp] 387 / 2e-129 AT4G14570 194 / 5e-56 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10032765 [exp] 99 / 4e-21 AT5G36210 606 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10021758 [exp] 76 / 1e-13 AT5G36210 949 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10010007 [exp] 65 / 2e-10 AT2G47390 1458 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10021235 [exp] 61 / 4e-09 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10022408 [exp] 54 / 3e-07 AT5G24260 1037 / 0.0 prolyl oligopeptidase family protein (.1) Lus10027619 [exp] 48 / 2e-05 AT5G20520 479 / 4e-172 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10011949 [exp] 47 / 5e-05 AT5G20520 437 / 1e-155 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160400 [exp] 1064 / 0 AT4G14570 971 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Potri.002G128700 [exp] 96 / 3e-20 AT5G36210 1049 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G196000 [exp] 64 / 2e-10 AT2G47390 1394 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.015G013400 [exp] 63 / 8e-10 AT5G24260 968 / 0.0 prolyl oligopeptidase family protein (.1) Potri.002G013900 [exp] 62 / 1e-09 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247300 [exp] 62 / 1e-09 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.014G120600 [exp] 62 / 1e-09 AT2G47390 1466 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.005G247400 [exp] 61 / 2e-09 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 60 / 5e-09 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.012G014900 [exp] 56 / 1e-07 AT5G24260 1027 / 0.0 prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10039405 pacid=23175699 polypeptide=Lus10039405 locus=Lus10039405.g ID=Lus10039405.BGIv1.0 annot-version=v1.0 ATGGAGGATGAGTACGATTCCCAATCCAAGTTGCTCAGAGAGTTCGCAAGCATATCAAGCATTGACAAGGCATGGACTTTCAAGTCCCAGAGCGGAATTG GGTCGCAGGCAATGTTTGCACTTAGCCAAGCGAATTTGCTGGCTAATAAAAGGAGGAAATTCGTTGTGTCTACTAGTATTTCAAAGGGAAATGGGGATAG TTCAGTGAGCTTTCAGTGGGCACCCTTTCCTGTTGAGATGTTAGGTGTGGCTACTATACTTCCATCTCCTTCAGGTTCCAAACTTTTAGTTGTCAGGAAC CCTGAGAACGACTCTCCAGTTCAGTTTGAAATCTGGTTCCAGTCTAACTTAGAGAAGGAGTTCCTGATTCCCCAGTCAGTTCATGGTTCTGTGTACACTG ATGGCTGGTTCGAAGGGATTTCGTGGAACTCTGATGAAAGTCACATTGCTTATGTTGCTGAAGAGGCACCTCCCACCAAGCCTAGCTTTGATCATCACGG CTATAAGAAATGTGGCTCCACGGTAAAAGATTGTGGTAGCTGGAAAGGACTAGGGGAATGGGAGGAAGAATGGGGAGAAACATATGCTGGAAAAAGACGG CCTGTGCTGTTTGTTATTGACGTTAACAGTGGAGAGGTTCAGCCTGTCGAAGGAGTTGCGAAACATCTAAGTGTTGGCCAAGTTGTCTGGGCTCCTTCAA CCGATAAGTCAGATCATTATTTGGTGTTTGTTGGCTGGTCATCAGAGAGAAGGAAGCTTGGCATAAGGCATTGCTATAATAGGCCTTGTGCCTTATATGC TGCTAAAGCACCATTGTTCGGGGAGATTTCTGTGCTAGACTCATCTGTGATTAATGTAACTCAAGGGTTAGGAAGTGCCTTCTTCCCTCTGTTCAGCCCA GATGGAAGGTCTCTAGTGTTTTTATCTGCTAGAAGCTGTGTGGGGTCAGGTGCACATTGGGGAACTGAATCCCTTCATCGAATTGATTGGCTTGCTGACC TAAAGGCACTCTCATCTGCCAACGTTGTTGAAGTGATTCCAGTCGTTCAGTGTCCAGAGGATGGTGGCTTTCCAGGGCTATACTCTGCGGGTTTTCTTCG TAATCCATGGCTTTCTGATGGATCCACGATTGTTCTAAACTCTGTGTGGCATAGCAGTGAGGTTATACTGGCTGTGAATGTTGTAAGTGGTGTTCTGAGG CGAATCAGTCCTAATGACTCGAATTCTGGATGGCATGCTCTTACACTAGACGATGACAACATCATTGCTGTTTCTAGCAGCCCAGTAGATCTTCCTCAAA TCAAGTATGGGCATCTTGCCGATAAAGCAGTTCAAACCGCTGCTTTTAATTGGTTAAGCGTTCCAAGTCCCATGAATAATTGCTCTGACAGGGTTATATC ACTGCTCTCGTCTCGGGAGTTCAGCATTCTGAAGATCCCAGTGAGAGACGTGTCTGCTAATTTGGAAAAAGGTGCAACTAAACCATACGAAGCTATTTAC GTCTCTTGCACTTCCAAGAAAAGTGATCGATTAGATCCAATGATTGTTTTCCTTCATGGAGGCCCACATACTGTGTCAGTATCAAGCTTTTCGAAGAATC TTGCATTTCTGACTTCACTGGGATACAGTTTATTGATAGTGAATTACAGAGGATCATTGGGGTTTGGTGAGGAAGCATTGCAATCTCTTGCTGGAAAAGT TGGAACACAGGATGTCAATGACGTACTTGCAGCTGTAGACTATGCCATTGACAAGGGACTTGCTAACCCAACCAAATTAGTTGTGGTTGGTGGTTCTCAT GGGGGGTTCCTGACAACTCACCTCATAGGCCAGGCGCCAGAAAAGTTTGCTGCTGCAGCTACAAGGAATCCAGCCTGCAATCTTGCATCAATGGTGGGTG CGACAGACATCCCAGATTGGTGTTATTTTGAAGCCTATGGAAGTGAGGGCAAAGATAAGTTTACAGAGGCAACGTCAGCTGCTGACCTTGCCGTTTTCCA CAGAAAATCTCCTATTTCACACATCTCAAAAGTGAAAACACCAACACTGTTTCTCATAGGTGCAAAGGATCTCCGCGTACCACCGTCCAATGGCATACAA TACGCTCGAGCATTGAAGGAGAAAGGAGTGGAGACAAAGATGATAATATTTCCGAATGATGTTCATGGAATCGATAGACCACAGTCTGACTACGAGAGCT TCCTCAACATCGGCATTTGGTTCAAGACGTACTGCAACTGA
AA sequence Show only first row Show all	>Lus10039405 pacid=23175699 polypeptide=Lus10039405 locus=Lus10039405.g ID=Lus10039405.BGIv1.0 annot-version=v1.0 MEDEYDSQSKLLREFASISSIDKAWTFKSQSGIGSQAMFALSQANLLANKRRKFVVSTSISKGNGDSSVSFQWAPFPVEMLGVATILPSPSGSKLLVVRN PENDSPVQFEIWFQSNLEKEFLIPQSVHGSVYTDGWFEGISWNSDESHIAYVAEEAPPTKPSFDHHGYKKCGSTVKDCGSWKGLGEWEEEWGETYAGKRR PVLFVIDVNSGEVQPVEGVAKHLSVGQVVWAPSTDKSDHYLVFVGWSSERRKLGIRHCYNRPCALYAAKAPLFGEISVLDSSVINVTQGLGSAFFPLFSP DGRSLVFLSARSCVGSGAHWGTESLHRIDWLADLKALSSANVVEVIPVVQCPEDGGFPGLYSAGFLRNPWLSDGSTIVLNSVWHSSEVILAVNVVSGVLR RISPNDSNSGWHALTLDDDNIIAVSSSPVDLPQIKYGHLADKAVQTAAFNWLSVPSPMNNCSDRVISLLSSREFSILKIPVRDVSANLEKGATKPYEAIY VSCTSKKSDRLDPMIVFLHGGPHTVSVSSFSKNLAFLTSLGYSLLIVNYRGSLGFGEEALQSLAGKVGTQDVNDVLAAVDYAIDKGLANPTKLVVVGGSH GGFLTTHLIGQAPEKFAAAATRNPACNLASMVGATDIPDWCYFEAYGSEGKDKFTEATSAADLAVFHRKSPISHISKVKTPTLFLIGAKDLRVPPSNGIQ YARALKEKGVETKMIIFPNDVHGIDRPQSDYESFLNIGIWFKTYCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Lus10039405 [exp]	0	1
AT4G33925		SSN2	suppressor of sni1 2, unknown ...		Lus10019878 [exp]	1.7	0.9036
AT1G67550		URE	urease (.1)		Lus10036993 [exp]	3.2	0.8943
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10013053 [exp]	4.9	0.8710
AT5G17620			unknown protein		Lus10013643 [exp]	6.5	0.8581
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001018 [exp]	7.1	0.8629
AT1G12650			unknown protein		Lus10017837 [exp]	8.5	0.8545
AT5G65980			Auxin efflux carrier family pr...		Lus10001303 [exp]	11.5	0.8486
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10009502 [exp]	13.0	0.8568
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	13.9	0.8622
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002547 [exp]	20.0	0.8252

Compare expression of checked genes

Lus10039405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.